Hg_chrom4_TN10mRNA_8719
Organism: Heterodera glycines Gene Locus: chr4:11067441-11069036 Feature type: polypeptideProtein Sequence
Length: 286
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.423 | 0.894 | 1.208 | 0.241 | 1.282 | 1.345 | 1.207 | 0.874 | 1.01 | 1.04 | 0.212 | 3.497 | 0.583 | 0.672 | 1.284 | 0.599 | 1.433 | 0.901 | 0.269 | 0.309 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8187
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.453
|
0.327
|
0.041
|
0.599
|
0.139
|
0.106
|
0.110
|
0.015
|
0.259
|
0.376
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000555
|
5.000
|
2.000
|
Hsc_gene_12047.t1;Hsc_gene_20002.t1
|
— | — | — |
CDJ95205.1 Ankyrin domain containing protein, partial [Haemonchus contortus]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.716|GO:0003674_0.667|GO:0005488_0.596|GO:0005515_0.546|GO:0032501_0.537|GO:0032502_0.517|GO:0048856_0.517|GO:0007275_0.509|GO:0048731_0.502
|
IPR002110+86-115_86-117_86-118_120-150_125-215_154-183_154-186_187-216_187-219+|IPR036770+51-277_74-241+
|
SM00248+86-115_120-150_154-183_187-216+
|
PF00023+86-117+Ankyrin_repeat|PF12796+125-215+Ankyrin_repeats_(3_copies)
|
— |
PTHR24141+125-264+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24;189-286
|
1.000
|
25-188
|
4hll_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.771
|
30559.300
|
4.303
|
-16.500
|
23.776
|
5.245
|
45.804
|
54.196
|
9.441
|
14.336
|
55.944
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
774.317
|
5.535
|
7.170
|
19.784
|
103.702
|
2631.750
|
77.767
|
3970.063
|
0.000
|
831.721
|
475.269
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.704
|
1.575
|
2.360
|
4.679
|
-5.069
|
— |
-5.525
|
-10.495
|
5.163
|
— | — | — |
No JSON data available for plots.