Hg_chrom4_TN10mRNA_8724
Organism: Heterodera glycines Gene Locus: chr4:11179408-11181226 Feature type: polypeptideProtein Sequence
Length: 158
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.368 | 1.325 | 0.921 | 0.0 | 2.215 | 4.219 | 0.301 | 1.266 | 1.266 | 0.855 | 0.959 | 2.606 | 1.055 | 0.609 | 0.646 | 0.633 | 0.726 | 0.671 | 2.434 | 0.558 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8192
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.722
|
0.230
|
0.005
|
0.494
|
0.037
|
0.182
|
0.059
|
0.003
|
0.059
|
0.188
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001049
|
4.000
|
1.000
|
Hsc_gene_25140.t1
|
— | — |
Q9Y232.2 Chromodomain Y-like protein [Homo sapiens]
|
2DNT_A Chain A, Chromodomain protein, Y chromosome-like, isoform b [Homo sapiens]
|
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.862|GO:0110165_0.857|GO:0005622_0.844|GO:0008150_0.841|GO:0043226_0.795|GO:0016020_0.783|GO:0043229_0.771|GO:0003674_0.762|GO:0005488_0.762|GO:0043227_0.738|GO:0043231_0.706|GO:0005515_0.666|GO:0005634_0.649|GO:0009987_0.621|GO:0065007_0.618|GO:0050789_0.613|GO:0050794_0.603|GO:0032502_0.586|GO:0022414_0.521|GO:0008152_0.514|GO:0019222_0.514|GO:0019953_0.512|GO:0043170_0.506|GO:0003006_0.502
|
IPR000953+103-155_104-158+|IPR016197+100-154+|IPR023780+104-147+
|
SM00298+103-155+
|
PF00385+104-147+Chromo_(CHRromatin_Organisation_MOdifier)_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-42;157-158
|
1.000
|
43-156
|
2dnt_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.957
|
19072.150
|
4.335
|
-12.000
|
30.380
|
11.392
|
61.392
|
38.608
|
12.025
|
18.354
|
32.911
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
101.150
|
0.154
|
0.157
|
0.736
|
0.668
|
2.239
|
0.814
|
0.827
|
2.924
|
438.238
|
251.675
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
-7.334
|
— |
-8.754
|
— | — |
No JSON data available for plots.