Hg_chrom4_TN10mRNA_8725
Organism: Heterodera glycines Gene Locus: chr4:11209452-11211721 Feature type: polypeptideProtein Sequence
Length: 148
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.786 | 0.786 | 0.86 | 1.864 | 0.788 | 0.866 | 0.804 | 1.351 | 1.652 | 0.913 | 0.921 | 2.782 | 2.628 | 1.169 | 1.103 | 0.579 | 1.218 | 0.307 | 0.52 | 0.596 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8193
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.452
|
0.148
|
0.009
|
0.648
|
0.204
|
0.061
|
0.174
|
0.065
|
0.039
|
0.190
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000576
|
6.000
|
1.000
|
Hsc_gene_15670.t1
|
— | — |
Q09442.2 Splicing factor 3B subunit 4 [Caenorhabditis elegans]
|
KAI3408888.1 RNA recognition motif [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.883|GO:0009987_0.815|GO:0005575_0.724|GO:0110165_0.720|GO:0008152_0.653|GO:0044238_0.640|GO:0016020_0.637|GO:0044237_0.631|GO:0043170_0.629|GO:0009058_0.627|GO:0005622_0.621|GO:0044249_0.619|GO:0009059_0.611|GO:0010467_0.604|GO:0043226_0.585|GO:0003674_0.583|GO:0043229_0.560|GO:0043227_0.549|GO:0043231_0.549|GO:0006139_0.538|GO:0034654_0.529|GO:0090304_0.525|GO:0016070_0.524|GO:0032774_0.522|GO:0141187_0.522|GO:0005488_0.509|GO:0000375_0.501|GO:0000377_0.501|GO:0000398_0.501|GO:0006396_0.501|GO:0006397_0.501|GO:0008380_0.501|GO:0016071_0.501
|
IPR000504+1-64_4-42+|IPR012677+1-74+|IPR035979+3-68+|IPR052084+43-95+
|
— |
PF00076+4-42+RNA_recognition_motif
|
— |
PTHR48030+43-95+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-148
|
8y7e_4
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
16833.650
|
8.094
|
5.000
|
23.649
|
14.865
|
41.892
|
58.108
|
14.189
|
9.459
|
46.622
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
50.154
|
1.142
|
1.752
|
2.252
|
1.520
|
1.493
|
2.228
|
1.107
|
0.000
|
215.114
|
122.922
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
-8.533
|
— |
-6.809
|
— | — |
No JSON data available for plots.