Hg_chrom4_TN10mRNA_8726
Organism: Heterodera glycines Gene Locus: chr4:11220520-11221517 Feature type: polypeptideProtein Sequence
Length: 121
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.153 | 1.153 | 1.202 | 1.425 | 0.964 | 1.06 | 0.787 | 0.826 | 0.735 | 1.229 | 0.877 | 1.458 | 2.525 | 1.113 | 0.843 | 0.708 | 0.813 | 0.751 | 0.0 | 0.486 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8194
|
— | — |
2.000
|
3.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.608
|
0.123
|
0.006
|
0.583
|
0.154
|
0.060
|
0.079
|
0.037
|
0.018
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000576
|
6.000
|
1.000
|
Hsc_gene_15670.t1
|
Hsc_gene_15670.t1;Hsc_gene_15671.t1
|
— |
Q09442.2 Splicing factor 3B subunit 4 [Caenorhabditis elegans]
|
KAI3408888.1 RNA recognition motif [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.838|GO:0005575_0.759|GO:0110165_0.756|GO:0009987_0.697|GO:0005622_0.643|GO:0003674_0.586|GO:0016020_0.554|GO:0005488_0.550|GO:0008152_0.545|GO:0043170_0.540|GO:0065007_0.540|GO:0044238_0.539|GO:0044237_0.535|GO:0043226_0.532|GO:0009058_0.531|GO:0044249_0.524|GO:0009059_0.523|GO:0010467_0.523|GO:0006139_0.509|GO:0050789_0.508|GO:0005737_0.504|GO:0090304_0.501
|
IPR000504+5-84_6-80_7-77+|IPR012677+4-94+|IPR034159+4-86+|IPR035979+5-93+|IPR052084+1-115+
|
SM00360+6-80+
|
PF00076+7-77+RNA_recognition_motif
|
G3DSA:3.30.70.330:FF:000059+1-93+splicing_factor_3B_subunit_4
|
PTHR48030+1-115+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-121
|
8y7e_4
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.524
|
13385.280
|
5.123
|
-2.000
|
23.967
|
12.397
|
42.975
|
57.025
|
11.570
|
12.397
|
52.893
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
10.947
|
2.978
|
1.883
|
3.568
|
6.366
|
5.024
|
11.461
|
3.599
|
4.466
|
31.465
|
19.894
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.202
|
— |
1.818
|
— | — | — | — | — |
No JSON data available for plots.