Hg_chrom4_TN10mRNA_8727
Organism: Heterodera glycines Gene Locus: chr4:11222787-11223858 Feature type: polypeptideProtein Sequence
Length: 170
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.368 | 1.368 | 0.963 | 1.217 | 1.078 | 0.905 | 0.7 | 0.882 | 0.784 | 1.192 | 0.802 | 1.73 | 1.961 | 1.018 | 0.96 | 0.84 | 0.964 | 0.891 | 0.0 | 0.173 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8195
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — |
1-16
|
0.846
|
1.000
|
0.000
|
0.000
|
0.596
|
0.179
|
0.007
|
0.413
|
0.136
|
0.058
|
0.114
|
0.030
|
0.032
|
0.151
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000576
|
6.000
|
1.000
|
Hsc_gene_15670.t1
|
Hsc_gene_15670.t1;Hsc_gene_15671.t1
|
— |
Q09442.2 Splicing factor 3B subunit 4 [Caenorhabditis elegans]
|
KAI3408888.1 RNA recognition motif [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.805|GO:0005575_0.775|GO:0110165_0.775|GO:0009987_0.659|GO:0005622_0.636|GO:0003674_0.600|GO:0016020_0.592|GO:0043226_0.545|GO:0008152_0.544|GO:0005488_0.534|GO:0044238_0.534|GO:0044237_0.528|GO:0043170_0.521|GO:0009058_0.519|GO:0005737_0.508|GO:0044249_0.507|GO:0065007_0.505|GO:0043227_0.502
|
IPR000504+54-133_55-129_56-126+|IPR012677+18-143+|IPR034159+53-135+|IPR035979+46-141+|IPR052084+40-164+
|
SM00360+55-129+
|
PF00076+56-126+RNA_recognition_motif
|
G3DSA:3.30.70.330:FF:000059+50-142+splicing_factor_3B_subunit_4
|
PTHR48030+40-164+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-170
|
8y7e_4
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
18518.140
|
5.690
|
-1.500
|
23.529
|
9.412
|
44.706
|
55.294
|
11.765
|
11.765
|
55.294
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
white
|
1.061
|
0.298
|
1.031
|
1.128
|
1.718
|
1.242
|
3.646
|
3.321
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |