Hg_chrom4_TN10mRNA_8729
Organism: Heterodera glycines Gene Locus: chr4:11231746-11237685 Feature type: polypeptideProtein Sequence
Length: 442
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.973 | 1.263 | 1.357 | 1.17 | 1.018 | 1.566 | 0.727 | 1.357 | 1.006 | 0.917 | 0.411 | 1.198 | 1.445 | 0.74 | 1.524 | 0.743 | 0.927 | 1.131 | 0.87 | 0.665 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8197
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.593
|
0.263
|
0.009
|
0.576
|
0.133
|
0.165
|
0.097
|
0.022
|
0.093
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009012
|
1.000
|
1.000
|
Hsc_gene_15598.t1
|
Hsc_gene_11916.t1;Hsc_gene_11916.t2;Hsc_gene_15598.t1;Hsc_gene_22838.t1
|
— |
Q9D864.2 Actin-related protein 6 [Mus musculus]
|
KAI3408889.1 Actin- protein 6 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.843|GO:0110165_0.825|GO:0008150_0.799|GO:0009987_0.728|GO:0005622_0.722|GO:0016020_0.625|GO:0043226_0.590|GO:0043229_0.580|GO:0065007_0.530|GO:0005737_0.525|GO:0050789_0.515
|
IPR004000+4-419_4-420_6-412+|IPR043129+4-141_148-420+
|
SM00268+4-420+
|
PF00022+4-419+Actin
|
G3DSA:3.90.640.10:FF:000014+185-296+Putative_actin-related_protein_6
|
PTHR11937+6-412+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
356-442
|
1.000
|
1-355
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
49794.820
|
5.200
|
-9.000
|
26.471
|
11.312
|
48.869
|
51.131
|
12.896
|
13.575
|
52.941
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
942.450
|
978.362
|
699.166
|
587.562
|
629.615
|
504.821
|
934.753
|
587.931
|
1268.218
|
1326.228
|
1301.367
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.715
|
-0.873
|
— | — |
-0.304
|
0.899
|
— |
0.811
|
— | — | — | — | — |
No JSON data available for plots.