Hg_chrom4_TN10mRNA_8733
Organism: Heterodera glycines Gene Locus: chr4:11271336-11280707 Feature type: polypeptideProtein Sequence
Length: 579
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.904 | 1.205 | 1.099 | 0.417 | 1.094 | 1.284 | 0.822 | 1.209 | 1.267 | 0.864 | 1.047 | 1.422 | 0.912 | 0.93 | 1.41 | 1.16 | 1.501 | 0.55 | 0.266 | 0.356 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8201
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.926
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
RRRR
|
21-41
|
0.969
|
17-68
|
0.996
|
1-21
|
0.854
|
0.998
|
0.000
|
0.000
|
0.160
|
0.308
|
0.072
|
0.182
|
0.069
|
0.030
|
0.144
|
0.166
|
0.340
|
0.930
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002144
|
1.000
|
3.000
|
Hsc_gene_11905.t1;Hsc_gene_11908.t1;Hsc_gene_11908.t2
|
— | — | — |
NP_508972.2 Secreted protein [Caenorhabditis elegans];CCD68072.1 Secreted protein [Caenorhabditis elegans]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
185-415;457-579
|
2.000
|
1-184;416-456
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
63909.610
|
8.930
|
14.000
|
28.843
|
7.254
|
56.304
|
43.696
|
16.235
|
12.608
|
52.850
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
274.199
|
55.981
|
37.265
|
13.846
|
32.955
|
63.864
|
32.242
|
18.911
|
231.928
|
930.028
|
630.842
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.815
|
-2.153
|
-1.322
|
1.223
|
0.968
|
-0.979
|
-1.866
|
0.910
|
— | — |
-4.245
|
— | — |