Hg_chrom4_TN10mRNA_8734
Organism: Heterodera glycines Gene Locus: chr4:11283090-11288373 Feature type: polypeptideProtein Sequence
Length: 551
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.591 | 1.013 | 0.825 | 1.064 | 0.484 | 1.536 | 0.864 | 1.452 | 0.968 | 1.104 | 0.66 | 0.854 | 2.117 | 1.78 | 1.111 | 0.959 | 1.25 | 0.99 | 0.279 | 0.587 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8202
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
nucleus
|
— | — | — | — | — | — | — |
0.576
|
0.367
|
2.000
|
— |
0.397
|
0.084
|
0.020
|
0.337
|
0.296
|
0.060
|
0.146
|
0.021
|
0.275
|
0.350
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000576
|
6.000
|
1.000
|
Hsc_gene_15670.t1
|
— | — |
Q09442.2 Splicing factor 3B subunit 4 [Caenorhabditis elegans]
|
KAI3408888.1 RNA recognition motif [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.923|GO:0005575_0.851|GO:0110165_0.850|GO:0009987_0.825|GO:0016020_0.727|GO:0065007_0.676|GO:0005622_0.652|GO:0003674_0.643|GO:0050789_0.636|GO:0043226_0.598|GO:0050794_0.585|GO:0005488_0.578|GO:0008152_0.552|GO:0043170_0.552|GO:0009058_0.545|GO:0043227_0.542|GO:0043229_0.542|GO:0043231_0.542|GO:0044238_0.542|GO:0044237_0.537|GO:0044249_0.535|GO:0009059_0.533|GO:0010467_0.527
|
IPR000504+293-371_294-367_295-364+|IPR001791+13-121+|IPR012677+264-380+|IPR013320+12-129+|IPR035979+295-384+|IPR052084+280-467+
|
SM00360+294-367+
|
PF00076+295-364+RNA_recognition_motif|PF02210+13-121+Laminin_G_domain
|
— |
PTHR48030+280-467+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
357-486
|
2.000
|
1-356;487-551
|
8y7e_4
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.926
|
61105.940
|
8.803
|
21.000
|
20.145
|
12.886
|
44.828
|
55.172
|
12.704
|
7.441
|
54.446
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
78.994
|
525.091
|
136.929
|
63.350
|
51.731
|
30.946
|
38.351
|
47.415
|
1.028
|
9.649
|
5.954
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.169
|
-3.188
|
-1.002
|
— |
-0.726
|
— | — | — | — |
5.851
|
— | — | — |