Hg_chrom4_TN10mRNA_8736
Organism: Heterodera glycines Gene Locus: chr4:11305771-11309000 Feature type: polypeptideProtein Sequence
Length: 423
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.467 | 1.649 | 0.731 | 1.141 | 0.985 | 1.03 | 0.45 | 0.946 | 1.944 | 1.246 | 1.182 | 1.53 | 1.642 | 0.636 | 1.206 | 0.777 | 0.891 | 1.003 | 1.091 | 1.043 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8204
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRLMKSLTRKRRKAKS
|
— | — | — | — | — | — |
0.197
|
— | — |
0.200
|
0.117
|
0.027
|
0.356
|
0.348
|
0.171
|
0.204
|
0.084
|
0.311
|
0.515
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000416
|
2.000
|
6.000
|
Hsc_gene_4726.t1;Hsc_gene_4727.t1;Hsc_gene_4727.t2;Hsc_gene_4733.t1;Hsc_gene_4733.t2;Hsc_gene_7900.t1
|
— | — | — | — |
MDE3160361
|
0.430
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-423
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
49351.550
|
9.287
|
20.000
|
25.532
|
12.766
|
47.518
|
52.482
|
15.603
|
9.929
|
43.026
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
54.249
|
2.119
|
29.785
|
52.875
|
12.627
|
3.036
|
3.541
|
4.946
|
35.466
|
169.892
|
112.281
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.576
|
4.493
|
0.939
|
-2.098
|
-2.045
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.