Hg_chrom4_TN10mRNA_8750
Organism: Heterodera glycines Gene Locus: chr4:11418080-11419912 Feature type: polypeptideProtein Sequence
Length: 209
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.668 | 0.779 | 0.609 | 1.485 | 1.116 | 1.84 | 0.342 | 0.478 | 1.595 | 1.422 | 0.725 | 2.533 | 1.994 | 1.196 | 1.172 | 1.025 | 0.941 | 0.652 | 0.368 | 0.563 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8218
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.439
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
48-72
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.671
|
0.286
|
0.009
|
0.527
|
0.135
|
0.146
|
0.133
|
0.043
|
0.069
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000417
|
1.000
|
7.000
|
Hsc_gene_4720.t1;Hsc_gene_4720.t2;Hsc_gene_4720.t3;Hsc_gene_4720.t4;Hsc_gene_4721.t1;Hsc_gene_4721.t2;Hsc_gene_4721.t3
|
Hsc_gene_4720.t1;Hsc_gene_4720.t2;Hsc_gene_4720.t3;Hsc_gene_4720.t4;Hsc_gene_4721.t3
|
— | — | — |
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-209
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.638
|
23994.060
|
7.446
|
2.000
|
21.531
|
10.526
|
44.976
|
55.024
|
11.483
|
10.048
|
43.062
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
61.138
|
4.255
|
7.024
|
15.945
|
5.807
|
2.770
|
13.178
|
10.939
|
0.000
|
245.011
|
140.006
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.766
|
1.296
|
-1.483
|
— |
2.260
|
1.874
|
— |
-8.764
|
4.852
|
-5.124
|
— | — |
No JSON data available for plots.