Hg_chrom4_TN10mRNA_8753
Organism: Heterodera glycines Gene Locus: chr4:11476056-11492055 Feature type: polypeptideProtein Sequence
Length: 1,664
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.244 | 0.922 | 0.809 | 0.953 | 0.931 | 2.25 | 0.844 | 2.464 | 0.708 | 0.78 | 0.537 | 1.131 | 0.718 | 0.855 | 1.116 | 1.906 | 1.054 | 0.519 | 0.693 | 0.212 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8221
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKKK,RKSGPIVLLLNSNNSKKKG,KRHNHHGHHHLSQSAREKR,RKRAFSLGSKSWITKPFRK
|
— | — |
5-52
|
0.995
|
— | — |
0.000
|
— | — |
0.363
|
0.152
|
0.034
|
0.682
|
0.217
|
0.178
|
0.154
|
0.030
|
0.468
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003954
|
2.000
|
1.000
|
Hsc_gene_4710.t1
|
Hsc_gene_4710.t1
|
— | — |
KAF7634627.1 PH domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR001849+32-135_33-137+|IPR011993+26-132_178-291+
|
SM00233+33-137+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-26;298-496;648-925;1045-1664
|
3.000
|
27-297;497-647;926-1044
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.827
|
179055.300
|
7.032
|
24.000
|
23.978
|
9.135
|
56.490
|
43.510
|
13.942
|
10.036
|
56.611
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
4918.047
|
15326.566
|
4482.113
|
1096.480
|
1122.231
|
1706.029
|
1195.980
|
3796.645
|
4628.656
|
7272.695
|
6139.535
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.002
|
-3.942
|
-1.923
|
— |
0.619
|
-0.503
|
1.063
|
-1.531
|
— |
-1.908
|
— | — | — |
No JSON data available for plots.