Hg_chrom4_TN10mRNA_8760
Organism: Heterodera glycines Gene Locus: chr4:11527667-11535573 Feature type: polypeptideProtein Sequence
Length: 350
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.565 | 2.126 | 0.519 | 1.084 | 1.048 | 0.733 | 0.714 | 0.857 | 1.905 | 0.734 | 0.823 | 1.681 | 0.873 | 0.714 | 0.991 | 1.796 | 1.218 | 0.996 | 0.44 | 0.588 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8228
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.507
|
0.163
|
0.005
|
0.624
|
0.083
|
0.247
|
0.174
|
0.064
|
0.058
|
0.186
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001285
|
1.000
|
4.000
|
Hsc_gene_1044.t1;Hsc_gene_1044.t2;Hsc_gene_11898.t1;Hsc_gene_16104.t1
|
— | — | — |
XP_018909889.1 PREDICTED: ring finger protein 26-like [Bemisia tabaci]
|
No
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.950|GO:0009987_0.892|GO:0065007_0.872|GO:0050789_0.859|GO:0050794_0.853|GO:0005575_0.824|GO:0110165_0.818|GO:0050896_0.771|GO:0005622_0.735|GO:0048519_0.678|GO:0003674_0.659|GO:0008219_0.619|GO:0012501_0.617|GO:0043067_0.615|GO:0008152_0.607|GO:0043170_0.607|GO:0051716_0.602|GO:0048523_0.592|GO:0044238_0.588|GO:0019222_0.581|GO:0060255_0.569|GO:0019538_0.547|GO:0043069_0.545|GO:0048583_0.543|GO:0016020_0.530|GO:0031323_0.528|GO:0044237_0.528|GO:0005737_0.527|GO:0048518_0.516|GO:0007154_0.512|GO:0023052_0.504
|
IPR001841+294-337_294-338+|IPR013083+270-350+
|
SM00184+294-337+
|
PF13920+292-342+Zinc_finger,_C3HC4_type_(RING_finger)
|
— |
PTHR22696+205-349+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
158-258
|
2.000
|
1-157;259-350
|
3eb6_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.945
|
38389.450
|
8.118
|
7.000
|
21.143
|
7.429
|
53.143
|
46.857
|
12.000
|
9.143
|
56.286
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
434.131
|
2.615
|
29.146
|
290.438
|
44.475
|
3.289
|
4.263
|
4.429
|
1413.566
|
697.152
|
1004.186
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.259
|
6.665
|
3.420
|
-2.737
|
-3.740
|
— | — | — | — | — |
-3.867
|
— | — |
No JSON data available for plots.