Hg_chrom4_TN10mRNA_8761
Organism: Heterodera glycines Gene Locus: chr4:11576352-11584917 Feature type: polypeptideProtein Sequence
Length: 608
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.128 | 1.339 | 0.688 | 0.454 | 0.932 | 0.759 | 0.724 | 1.069 | 1.023 | 1.445 | 0.972 | 2.225 | 1.279 | 1.297 | 0.738 | 0.658 | 0.728 | 1.271 | 0.759 | 1.113 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8229
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.744
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-21
|
0.998
|
1.000
|
0.000
|
1.000
|
0.221
|
0.299
|
0.071
|
0.380
|
0.727
|
0.391
|
0.524
|
0.022
|
0.185
|
0.201
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009019
|
1.000
|
1.000
|
Hsc_gene_4699.t1
|
Hsc_gene_4699.t1
|
— |
Q05AM4.1 Fatty-acid amide hydrolase 2-B [Danio rerio]
|
KAF7630885.1 Amidase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.758|GO:0110165_0.758|GO:0008150_0.711|GO:0003674_0.634|GO:0005622_0.569|GO:0016020_0.541|GO:0003824_0.537|GO:0009987_0.528|GO:0005737_0.504
|
IPR023631+129-575+|IPR036928+82-586_104-595+|IPR052739+97-594+
|
— |
PF01425+129-575+Amidase
|
— |
PTHR43372+97-594+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
602-608
|
1.000
|
1-601
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
67440.500
|
8.262
|
10.500
|
21.546
|
11.513
|
39.309
|
60.691
|
12.171
|
9.375
|
50.822
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
6502.804
|
8.767
|
22.482
|
14.935
|
14.645
|
7784.200
|
106.376
|
66882.357
|
1.382
|
386.071
|
221.204
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.132
|
— | — | — |
9.064
|
-6.182
|
3.003
|
-9.155
|
-5.843
|
3.759
|
— | — | — |