SCN Proteipedia

Hg_chrom4_TN10mRNA_8764

Organism: Heterodera glycines Gene Locus: chr4:11635625-11660701 Feature type: polypeptide

Protein Sequence

Length: 2,162 (Signal peptide: 1-33)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.93	1.334	0.942	2.711	0.94	1.364	1.178	1.943	0.627	1.013	0.631	0.762	0.951	0.996	1.095	0.859	0.955	0.792	0.463	0.313	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8232	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Not_Clustered	0.956

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	membrane_bound	signal_peptide\|transmembrane_domain	cell_membrane	nucleus	RRKR	—	—	—	—	1-33	0.935	1.000	1.000	1.000	0.188	0.049	0.009	0.280	0.161	0.440	0.302	0.019	0.789	0.184

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003956	1.000	2.000	Hsc_gene_4696.t1;Hsc_gene_4748.t1	Hsc_gene_4696.t1	—	P10040.3 Protein crumbs [Drosophila melanogaster]	KAI1716520.1 EGF-like domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005509	GO:0008150_0.947\|GO:0005575_0.844\|GO:0110165_0.844\|GO:0065007_0.808\|GO:0050789_0.800\|GO:0009987_0.797\|GO:0032502_0.734\|GO:0048856_0.734\|GO:0032501_0.721\|GO:0007275_0.675\|GO:0016020_0.672\|GO:0050794_0.672\|GO:0050896_0.650\|GO:0048731_0.643\|GO:0007154_0.613\|GO:0071944_0.613\|GO:0023052_0.612\|GO:0030154_0.606\|GO:0048869_0.606\|GO:0003674_0.600\|GO:0005886_0.591\|GO:0051716_0.579\|GO:0007399_0.540\|GO:0005622_0.531\|GO:0009653_0.528\|GO:0048513_0.523\|GO:0007165_0.520\|GO:0005488_0.519	IPR000152+243-254_991-1002_1265-1276_1577-1588_1942-1953_1990-2001+\|IPR000742+39-80_42-80_68-79_81-115_82-115_103-114_154-193_157-193_164-191_181-192_226-264_229-264_235-261_252-263_266-304_269-304_292-303_306-339_347-386_350-386_356-383_374-385_424-470_427-470_458-469_489-526_492-526_493-523_703-737_706-737_725-736_739-783_742-783_771-782_964-1012_976-1012_982-1006_1000-1011_1246-1286_1249-1286_1274-1285_1520-1556_1523-1556_1524-1554_1544-1555_1558-1598_1561-1598_1586-1597_1600-1636_1603-1636_1624-1635_1639-1676_1642-1676_1643-1673_1664-1675_1678-1731_1681-1731_1719-1730_1733-1773_1736-1773_1761-1772_1775-1834_1778-1834_1822-1833_1835-1879_1838-1879_1867-1878_1881-1925_1884-1925_1885-1922_1913-1924_1927-1964_1930-1964_1966-2011_1969-2011_1980-2009_1999-2010_2015-2065_2053-2064+\|IPR001791+785-959_1018-1250_1037-1211_1043-1213_1087-1212_1326-1475_1326-1518_1347-1479_1355-1475+\|IPR001881+154-193_195-264_270-304_348-386_491-526_961-1012_1248-1286_1522-1556_1558-1598_1643-1676_1678-1731_1737-1773_1881-1925_1927-1964_1966-2011+\|IPR009030+235-387+\|IPR013032+1259-1280_1571-1592+\|IPR013320+770-959_984-1221_1274-1478+\|IPR018097+1558-1586_1966-1999+\|IPR051830+1517-1834+	SM00179+154-193_195-264_270-304_348-386_491-526_961-1012_1248-1286_1522-1556_1558-1598_1643-1676_1678-1731_1737-1773_1881-1925_1927-1964_1966-2011+\|SM00181+42-80_82-115_157-193_229-264_269-304_306-339_347-386_427-470_492-526_706-737_742-783_964-1012_1249-1286_1523-1556_1561-1598_1603-1636_1642-1676_1681-1731_1736-1773_1778-1834_1838-1879_1884-1925_1930-1964_1969-2011_2015-2065+\|SM00282+1043-1213_1347-1479+	PF00008+164-191_235-261_356-383_493-523_982-1006_1524-1554_1643-1673_1885-1922_1980-2009+EGF-like_domain\|PF02210+1087-1212_1355-1475+Laminin_G_domain\|PF12661+1259-1280_1571-1592+Human_growth_factor-like_EGF	G3DSA:2.10.25.10:FF:000006+233-266+Versican_core_protein-like_isoform_1\|G3DSA:2.10.25.10:FF:000039+1929-1966+Crumbs_cell_polarity_complex_component_1\|G3DSA:2.10.25.10:FF:000230+1883-1928+Delta-like_protein\|G3DSA:2.10.25.10:FF:000368+1641-1679+Delta-like_3_(Drosophila),_isoform_CRA_b\|G3DSA:2.10.25.10:FF:000472+1522-1602+Uncharacterized_protein,_isoform_A	PTHR24033+1517-1834+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	547-699	2.000	1-546;700-2162	7alj_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.761	232867.830	6.741	14.000	24.237	8.973	47.132	52.868	13.414	10.823	58.927

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	turquoise	1837.366	1012.316	763.623	990.964	919.210	684.382	515.908	507.937	330.563	5767.678	3437.486

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.637	-0.168	0.485	-0.140	-0.411	-0.397	-0.540	—	-4.249	—	-2.197	—	—

Properties

Window size Custom profile

Custom patterns

Back to Browser