Hg_chrom4_TN10mRNA_8768
Organism: Heterodera glycines Gene Locus: chr4:11698701-11703204 Feature type: polypeptideProtein Sequence
Length: 304
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.033 | 0.535 | 0.718 | 0.907 | 0.329 | 0.928 | 0.979 | 1.48 | 1.096 | 1.2 | 0.399 | 1.161 | 1.371 | 0.949 | 1.41 | 0.846 | 1.618 | 0.847 | 2.024 | 1.838 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8236
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
27-68
|
0.855
|
— | — | — | — |
0.000
|
— | — |
0.098
|
0.900
|
0.039
|
0.113
|
0.121
|
0.209
|
0.171
|
0.073
|
0.081
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009022
|
1.000
|
1.000
|
Hsc_gene_23933.t1
|
Hsc_gene_11581.t1;Hsc_gene_11583.t1;Hsc_gene_23933.t1
|
— |
Q9H2D1.2 Solute carrier family 25 member 32 [Homo sapiens]
|
KAI1724108.1 mitochondrial carrier protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006862|GO:0055085
|
GO:0008150_0.845|GO:0005575_0.824|GO:0110165_0.823|GO:0009987_0.738|GO:0016020_0.736|GO:0003674_0.734|GO:0005622_0.695|GO:0005737_0.684|GO:0043226_0.659|GO:0043227_0.643|GO:0043229_0.641|GO:0043231_0.633|GO:0051179_0.619|GO:0006810_0.615|GO:0051234_0.615|GO:0055085_0.547|GO:0071705_0.544|GO:0005215_0.520|GO:0022857_0.520
|
IPR018108+2-91_5-92_98-199_99-199_212-296_212-297+|IPR023395+5-292_6-296+|IPR044712+5-301+
|
— |
PF00153+5-92_99-199_212-297+Mitochondrial_carrier_protein
|
— |
PTHR45683+5-301+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-304
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.804
|
34172.190
|
9.333
|
15.500
|
18.421
|
16.776
|
40.132
|
59.868
|
12.500
|
5.921
|
52.303
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
383.346
|
577.237
|
300.067
|
338.782
|
466.790
|
345.671
|
463.490
|
190.623
|
74.060
|
615.595
|
383.509
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.174
|
-0.906
|
0.284
|
0.431
|
-0.419
|
0.433
|
-0.964
|
1.424
|
-3.172
|
— | — | — | — |
No JSON data available for plots.