Hg_chrom4_TN10mRNA_8769
Organism: Heterodera glycines Gene Locus: chr4:11704467-11706759 Feature type: polypeptideProtein Sequence
Length: 217
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.965 | 1.072 | 1.341 | 0.318 | 1.152 | 1.063 | 0.823 | 0.23 | 1.229 | 1.121 | 1.117 | 1.355 | 1.408 | 0.62 | 1.693 | 0.592 | 0.831 | 0.978 | 2.127 | 0.542 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8237
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRVGAWVEFLRARKVKG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.654
|
0.265
|
0.001
|
0.631
|
0.274
|
0.199
|
0.176
|
0.056
|
0.193
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002146
|
2.000
|
2.000
|
Hsc_gene_23934.t1;Hsc_gene_23934.t3
|
Hsc_gene_23934.t2
|
— |
Q96GG9.1 DCN1-like protein 1 [Homo sapiens]
|
KAF7629248.1 Defective in cullin neddylation protein [Meloidogyne graminicola];KAF7633184.1 Defective in cullin neddylation protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.850|GO:0110165_0.841|GO:0005622_0.770|GO:0016020_0.756|GO:0043226_0.719|GO:0008150_0.718|GO:0043229_0.701|GO:0043227_0.667|GO:0043231_0.660|GO:0008152_0.578|GO:0044238_0.548|GO:0005634_0.539|GO:0043170_0.511|GO:0003674_0.503
|
IPR005176+11-210_100-208+|IPR014764+8-211+|IPR042460+112-216+
|
— |
PF03556+100-208+Cullin_binding
|
G3DSA:1.10.238.200:FF:000003+112-215+DCN1-like_protein_3
|
PTHR12281+8-211+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-29
|
1.000
|
30-217
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.673
|
24834.360
|
8.983
|
3.500
|
30.415
|
10.138
|
48.387
|
51.613
|
16.129
|
14.286
|
47.005
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
brown
|
196.416
|
316.233
|
238.494
|
298.007
|
340.148
|
261.358
|
279.397
|
234.499
|
39.971
|
91.289
|
69.296
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.637
|
-0.223
|
0.430
|
0.159
|
-0.365
|
— | — |
0.394
|
— | — |
2.860
|
— | — |
No JSON data available for plots.