Hg_chrom4_TN10mRNA_8774
Organism: Heterodera glycines Gene Locus: chr4:11746089-11758626 Feature type: polypeptideProtein Sequence
Length: 717
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.022 | 1.168 | 0.938 | 0.529 | 0.976 | 0.823 | 0.764 | 1.464 | 0.992 | 1.187 | 0.465 | 1.805 | 1.511 | 0.966 | 1.622 | 0.877 | 0.686 | 1.162 | 1.824 | 0.861 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8242
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
nucleus
|
RDRKRKG,RRRDRKRK,RRFYPMFGERPVGVRRRDR
|
— | — | — | — |
1-29
|
0.961
|
1.000
|
1.000
|
1.000
|
0.104
|
0.016
|
0.012
|
0.309
|
0.301
|
0.682
|
0.547
|
0.055
|
0.797
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009024
|
1.000
|
1.000
|
Hsc_gene_23942.t1
|
Hsc_gene_23941.t1;Hsc_gene_23942.t1
|
— |
Q07085.3 Esterase CM06B1 [Caenorhabditis elegans]
|
KAF7627090.1 COesterase domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.480
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0003674_0.829|GO:0008150_0.820|GO:0005575_0.762|GO:0110165_0.757|GO:0009987_0.735|GO:0016020_0.622|GO:0003824_0.616|GO:0008152_0.565|GO:0016787_0.553|GO:0016788_0.529|GO:0052689_0.520|GO:0071944_0.506
|
IPR002018+35-619+|IPR002168+142-158+|IPR029058+29-648_37-619+|IPR050309+8-643+
|
— |
PF00135+35-619+Carboxylesterase_family
|
— |
PTHR11559+8-643+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-717
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.708
|
81374.920
|
7.555
|
10.500
|
24.965
|
13.668
|
43.515
|
56.485
|
13.947
|
11.018
|
49.930
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
1456.840
|
243.772
|
608.494
|
255.744
|
152.751
|
229.036
|
153.264
|
288.645
|
41.055
|
5618.495
|
3228.164
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.091
|
— |
-1.143
|
-0.775
|
0.599
|
-0.569
|
— |
-0.770
|
-4.603
|
— |
-2.494
|
— | — |