SCN Proteipedia

Hg_chrom4_TN10mRNA_8775

Organism: Heterodera glycines Gene Locus: chr4:11766535-11786451 Feature type: polypeptide

Protein Sequence

Length: 1,841

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.213	1.137	0.82	0.524	0.706	1.838	1.028	1.711	0.748	1.233	0.502	1.278	0.528	1.4	1.131	1.405	1.006	0.881	0.125	0.16	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8243	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.845

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	RRLRI	—	—	—	—	—	—	0.000	—	—	0.231	0.169	0.020	0.620	0.136	0.174	0.207	0.014	0.621	0.069

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001287	1.000	4.000	Hsc_gene_17908.t1;Hsc_gene_23945.t1;Hsc_gene_23945.t2;Hsc_gene_23945.t3	—	—	Q4H4B6.1 Protein scribble homolog [Danio rerio]	KAI1712160.1 PDZ domain (Also known as DHR or GLGF) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.911\|GO:0110165_0.894\|GO:0008150_0.859\|GO:0009987_0.799\|GO:0016020_0.758\|GO:0005622_0.722\|GO:0065007_0.663\|GO:0032501_0.640\|GO:0050789_0.632\|GO:0071944_0.612\|GO:0032502_0.603\|GO:0048856_0.603\|GO:0003674_0.599\|GO:0050794_0.594\|GO:0005886_0.571\|GO:0005488_0.549\|GO:0005737_0.537\|GO:0016043_0.523\|GO:0071840_0.523\|GO:0007275_0.515\|GO:0048731_0.501	IPR001478+803-902_821-898_823-902_839-899_1068-1159_1070-1162_1074-1158_1079-1162_1167-1266_1169-1256_1178-1269+\|IPR001611+38-96_85-106_108-129_177-234+\|IPR003591+38-60_61-82_83-106_107-129_152-174_175-197_198-221_244-267_313-336_359-382+\|IPR032675+10-123_124-235_236-403+\|IPR036034+819-907_820-902_1061-1162_1068-1162_1163-1270_1165-1268+\|IPR050614+6-932+	SM00228+823-902_1079-1162_1178-1269+\|SM00364+60-79_83-102_106-125_152-171_175-194_198-217_221-240_313-332_336-355_359-378+\|SM00369+38-60_61-82_83-106_107-129_152-174_175-197_198-221_244-267_313-336_359-382+	PF00595+821-898_1074-1158+PDZ_domain\|PF13855+38-96_177-234+Leucine_rich_repeat	—	PTHR23119+6-932+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	413-817;891-1065;1277-1841	3.000	1-412;818-890;1066-1276	4wyu_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.907	194242.680	7.775	33.500	21.021	6.029	49.049	50.951	12.276	8.745	59.044

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	greenyellow	1684.621	5192.499	1889.628	1218.995	988.317	1167.179	1691.772	1139.381	580.711	1951.768	1364.172

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.687	-2.228	-0.525	-0.334	0.255	0.545	—	0.712	—	—	—	—	—

No JSON data available for plots.

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