Hg_chrom4_TN10mRNA_8777
Organism: Heterodera glycines Gene Locus: chr4:11802553-11806608 Feature type: polypeptideProtein Sequence
Length: 533
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.393 | 0.873 | 0.546 | 0.776 | 2.001 | 0.77 | 0.246 | 0.844 | 0.876 | 1.648 | 0.512 | 0.883 | 0.521 | 1.479 | 0.881 | 0.509 | 4.183 | 0.625 | 0.144 | 0.166 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8245
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.669
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRRR
|
— | — | — | — | — | — |
0.373
|
— | — |
0.335
|
0.159
|
0.045
|
0.371
|
0.181
|
0.082
|
0.094
|
0.074
|
0.308
|
0.502
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003957
|
1.000
|
2.000
|
Hsc_gene_9604.t1;Hsc_gene_9604.t2
|
Hsc_gene_23950.t1
|
— | — |
KAH7728047.1 leucine-rich repeat-containing protein 1 [Aphelenchus avenae]
|
WP_339498413
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR001611+51-73_52-72_168-189+|IPR003591+29-49_50-71_72-94_95-118_143-166_185-208+|IPR032675+9-248+|IPR050715+23-229+
|
SM00369+29-49_50-71_72-94_95-118_143-166_185-208+
|
PF00560+52-72+Leucine_Rich_Repeat
|
— |
PTHR45752+23-229+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
223-462
|
2.000
|
1-222;463-533
|
9fqr_Xo
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.903
|
59229.600
|
4.287
|
-34.500
|
24.390
|
4.315
|
60.225
|
39.775
|
9.381
|
15.009
|
55.347
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
126.655
|
182.708
|
77.290
|
90.103
|
85.158
|
118.421
|
114.873
|
79.417
|
156.652
|
156.137
|
156.358
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.473
|
-1.157
|
0.333
|
— |
0.492
|
— |
-0.684
|
0.676
|
— | — | — |
-5.505
|
— |
No JSON data available for plots.