SCN Proteipedia

Hg_chrom4_TN10mRNA_8778

Organism: Heterodera glycines Gene Locus: chr4:11820965-11836525 Feature type: polypeptide

Protein Sequence

Length: 1,386

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.183	1.695	0.853	0.498	0.758	1.573	0.919	1.19	0.882	1.209	0.525	0.722	0.641	1.54	1.149	1.288	1.053	0.842	0.222	0.233	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8246	—	—	1.111	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.814

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	KRRP	—	—	—	—	—	—	0.008	—	—	0.181	0.159	0.027	0.666	0.132	0.209	0.179	0.011	0.577	0.087

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003958	2.000	1.000	Hsc_gene_23950.t1	Hsc_gene_23951.t1	—	Q3T0C9.1 Synaptojanin-2-binding protein [Bos taurus]	KAI1724103.1 leucine rich repeat domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.908\|GO:0110165_0.904\|GO:0008150_0.869\|GO:0009987_0.791\|GO:0016020_0.723\|GO:0005622_0.716\|GO:0003674_0.639\|GO:0065007_0.604\|GO:0071944_0.603\|GO:0050789_0.597\|GO:0005488_0.588\|GO:0032501_0.576\|GO:0032502_0.571\|GO:0048856_0.571\|GO:0050794_0.558\|GO:0005886_0.551\|GO:0043226_0.545\|GO:0016043_0.538\|GO:0071840_0.538\|GO:0005737_0.531\|GO:0005515_0.513\|GO:0007275_0.506	IPR001478+448-532_449-535_451-531_457-535_562-643_576-646+\|IPR001611+40-97_86-107_109-166_132-153_178-199_178-235_224-246+\|IPR003591+39-61_84-107_130-152_153-175_176-198_199-222_223-244_245-267_268-291+\|IPR032675+11-119_120-209_210-313+\|IPR036034+435-538_448-538_549-653_557-654+\|IPR050614+441-802+	SM00228+457-535_576-646+\|SM00364+84-103_130-149_176-195_222-241_245-264_268-288+\|SM00369+39-61_84-107_130-152_153-175_176-198_199-222_223-244_245-267_268-291+	PF00595+451-531+PDZ_domain\|PF13855+40-97_109-166_178-235+Leucine_rich_repeat	—	PTHR23119+441-802+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	313-416;683-1386	2.000	1-312;417-682	6lx0_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.921	147130.260	7.381	14.500	20.707	5.772	49.567	50.433	11.472	9.235	60.317

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	greenyellow	2320.329	2850.928	779.828	903.688	964.961	1730.591	1302.695	1130.945	331.997	6278.579	3730.044

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.099	-1.795	0.321	—	0.858	-0.401	-0.717	0.345	-4.335	—	—	—	—

No JSON data available for plots.

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