Hg_chrom4_TN10mRNA_8779
Organism: Heterodera glycines Gene Locus: chr4:11841211-11844852 Feature type: polypeptideProtein Sequence
Length: 266
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.093 | 1.224 | 0.752 | 1.296 | 0.376 | 1.253 | 1.074 | 0.94 | 1.253 | 1.27 | 0.456 | 1.106 | 1.149 | 1.012 | 1.611 | 1.396 | 0.74 | 0.797 | 1.735 | 0.111 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8247
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
20-41
|
0.986
|
— | — | — | — |
0.000
|
— | — |
0.213
|
0.192
|
0.008
|
0.480
|
0.091
|
0.037
|
0.069
|
0.015
|
0.287
|
0.339
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003958
|
2.000
|
1.000
|
Hsc_gene_23950.t1
|
— | — |
Q3T0C9.1 Synaptojanin-2-binding protein [Bos taurus]
|
KAI1724103.1 leucine rich repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.844|GO:0110165_0.835|GO:0008150_0.813|GO:0009987_0.712|GO:0003674_0.690|GO:0016020_0.655|GO:0005622_0.615|GO:0005488_0.606|GO:0065007_0.561|GO:0005515_0.546|GO:0071944_0.540|GO:0050789_0.524|GO:0005886_0.516
|
IPR001478+29-113_30-116_32-112_38-116+|IPR036034+15-119_28-119+|IPR050614+22-134+
|
SM00228+38-116+
|
PF00595+32-112+PDZ_domain
|
— |
PTHR23119+22-134+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-266
|
6myf_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.927
|
28797.000
|
9.916
|
14.500
|
19.173
|
8.647
|
43.609
|
56.391
|
12.782
|
6.391
|
56.391
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
669.522
|
9.730
|
5.451
|
3.257
|
3.949
|
12.025
|
25.530
|
21.072
|
6.556
|
2893.861
|
1656.445
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.062
|
-1.715
|
— | — |
1.629
|
1.092
|
— | — |
-8.929
|
— |
-8.952
|
— | — |
No JSON data available for plots.