Hg_chrom4_TN10mRNA_8780
Organism: Heterodera glycines Gene Locus: chr4:11850410-11852880 Feature type: polypeptideProtein Sequence
Length: 340
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.992 | 1.026 | 1.497 | 0.71 | 1.225 | 0.905 | 0.7 | 1.471 | 0.85 | 1.55 | 0.535 | 2.249 | 1.307 | 0.848 | 0.96 | 0.63 | 0.916 | 1.07 | 1.357 | 0.519 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8248
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.566
|
0.276
|
0.040
|
0.653
|
0.159
|
0.174
|
0.143
|
0.006
|
0.091
|
0.233
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000142
|
11.000
|
2.000
|
Hsc_gene_11567.t1;Hsc_gene_23079.t1
|
— | — | — |
KAI3418694.1 85/88 kDa calcium-independent phospholipase A2 [Globodera pallida]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0047499
|
GO:0008150_0.820|GO:0003674_0.757|GO:0005575_0.753|GO:0110165_0.640|GO:0065007_0.562|GO:0008152_0.540|GO:0005488_0.534|GO:0050896_0.531|GO:0005515_0.505
|
IPR002110+244-273_244-276_249-336_277-305+|IPR036770+53-338_199-336+|IPR047148+197-335+
|
SM00248+244-273_277-305+
|
PF12796+249-336+Ankyrin_repeats_(3_copies)
|
— |
PTHR24139+197-335+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-36
|
1.000
|
37-340
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
38154.360
|
4.405
|
-20.000
|
26.765
|
11.176
|
44.706
|
55.294
|
11.176
|
15.588
|
50.588
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
355.926
|
0.000
|
0.143
|
1.234
|
2.362
|
1.475
|
1.120
|
0.559
|
18.438
|
1540.765
|
888.339
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
4.729
|
— | — | — | — | — | — |
-6.542
|
— |
-8.833
|
— | — |
No JSON data available for plots.