Hg_chrom4_TN10mRNA_8781
Organism: Heterodera glycines Gene Locus: chr4:11853351-11857467 Feature type: polypeptideProtein Sequence
Length: 351
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.563 | 1.193 | 1.14 | 0.393 | 0.95 | 1.023 | 0.78 | 0.57 | 1.393 | 1.348 | 0.475 | 1.843 | 1.425 | 1.041 | 0.93 | 1.425 | 1.354 | 0.691 | 1.315 | 0.922 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8249
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.829
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.241
|
0.418
|
0.049
|
0.825
|
0.357
|
0.205
|
0.170
|
0.070
|
0.103
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000142
|
11.000
|
2.000
|
Hsc_gene_11567.t1;Hsc_gene_23079.t1
|
— | — |
Q20500.1 Intracellular phospholipase A2 [Caenorhabditis elegans]
|
KAI1725474.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629|GO:0047499
|
GO:0008150_0.949|GO:0009987_0.764|GO:0005575_0.748|GO:0110165_0.738|GO:0003674_0.729|GO:0050896_0.704|GO:0008152_0.681|GO:0044238_0.659|GO:0005622_0.658|GO:0005737_0.629|GO:0003824_0.612|GO:0006629_0.591|GO:0016787_0.567|GO:0016020_0.558|GO:0016788_0.542|GO:0052689_0.532|GO:0044237_0.530|GO:0016298_0.529|GO:0065007_0.525|GO:0050789_0.510|GO:0051716_0.503
|
IPR002641+93-267_93-270+|IPR016035+91-318+|IPR047148+30-345+
|
— |
PF01734+93-267+Patatin-like_phospholipase
|
— |
PTHR24139+30-345+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-42
|
1.000
|
43-351
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.577
|
39236.260
|
4.455
|
-13.000
|
20.798
|
11.111
|
48.148
|
51.852
|
8.832
|
11.966
|
52.137
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
1409.308
|
19.035
|
40.081
|
27.045
|
26.595
|
22.249
|
46.737
|
32.442
|
45.821
|
6051.038
|
3477.373
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.845
|
— |
-0.459
|
— | — |
1.081
|
— |
0.671
|
-7.162
|
— |
-7.320
|
— | — |
No JSON data available for plots.