Hg_chrom4_TN10mRNA_8782
Organism: Heterodera glycines Gene Locus: chr4:11858168-11866733 Feature type: polypeptideProtein Sequence
Length: 735
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.981 | 1.297 | 0.841 | 0.985 | 0.907 | 0.977 | 0.632 | 1.565 | 0.847 | 1.361 | 0.722 | 1.601 | 1.172 | 0.837 | 1.305 | 1.341 | 0.848 | 1.072 | 0.942 | 0.48 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8250
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.725
|
0.156
|
0.018
|
0.310
|
0.066
|
0.132
|
0.135
|
0.039
|
0.078
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000142
|
11.000
|
2.000
|
Hsc_gene_11567.t1;Hsc_gene_23079.t1
|
Hsc_gene_22591.t1;Hsc_gene_4489.t1
|
— |
Q20500.1 Intracellular phospholipase A2 [Caenorhabditis elegans]
|
KAI1725474.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0047499
|
GO:0005575_0.887|GO:0110165_0.860|GO:0008150_0.798|GO:0005622_0.731|GO:0016020_0.703|GO:0009987_0.657|GO:0043226_0.628|GO:0065007_0.622|GO:0043227_0.589|GO:0003674_0.581|GO:0043229_0.580|GO:0050789_0.555|GO:0050794_0.540|GO:0043231_0.537|GO:0050896_0.504
|
IPR002110+214-243_214-246_219-308_247-275_282-311_336-427_362-391_362-394_396-425_396-428_429-461+|IPR036770+169-307_205-450_308-464+|IPR047148+100-488+
|
SM00248+214-243_247-275_282-311_362-391_396-425_429-461+
|
PF12796+219-308_336-427+Ankyrin_repeats_(3_copies)
|
— |
PTHR24139+100-488+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20;467-522
|
2.000
|
21-466;523-735
|
5kwd_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.823
|
81616.170
|
8.229
|
19.500
|
24.354
|
10.204
|
48.299
|
51.701
|
14.286
|
10.068
|
52.789
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
539.578
|
3.907
|
243.948
|
99.913
|
27.619
|
15.192
|
14.404
|
11.745
|
516.166
|
1817.257
|
1259.647
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.739
|
4.541
|
-1.179
|
-1.888
|
-0.848
|
— | — | — | — | — |
-5.538
|
6.078
|
— |
No JSON data available for plots.