Hg_chrom4_TN10mRNA_8787
Organism: Heterodera glycines Gene Locus: chr4:11907464-11930667 Feature type: polypeptideProtein Sequence
Length: 879
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.058 | 0.873 | 0.621 | 0.981 | 0.379 | 2.392 | 1.341 | 2.958 | 0.556 | 0.892 | 0.379 | 1.807 | 0.79 | 1.4 | 0.882 | 1.544 | 0.988 | 0.672 | 0.175 | 0.435 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8255
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRPR,RAKDKRLKKD
|
29-51
|
0.927
|
1-41
|
1.000
|
— | — |
0.000
|
— | — |
0.705
|
0.143
|
0.070
|
0.403
|
0.054
|
0.045
|
0.101
|
0.061
|
0.210
|
0.213
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003960
|
1.000
|
2.000
|
Hsc_gene_11570.t1;Hsc_gene_11570.t2
|
Hsc_gene_11570.t1;Hsc_gene_11570.t2;Hsc_gene_11572.t1;Hsc_gene_11572.t2
|
— |
P20271.3 LIM/homeobox protein ceh-14 [Caenorhabditis elegans]
|
KAI1724099.1 LIM domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0006355
|
GO:0008150_0.899|GO:0032502_0.782|GO:0048856_0.782|GO:0009987_0.778|GO:0032501_0.746|GO:0007275_0.736|GO:0048731_0.731|GO:0065007_0.706|GO:0050789_0.699|GO:0050794_0.698|GO:0003674_0.692|GO:0005488_0.681|GO:0007399_0.672|GO:0048513_0.626|GO:0005575_0.623|GO:0110165_0.619|GO:0097159_0.614|GO:0022008_0.607|GO:0030154_0.607|GO:0048869_0.607|GO:0008152_0.603|GO:0019222_0.603|GO:0003676_0.601|GO:0031323_0.600|GO:0044237_0.600|GO:0044238_0.598|GO:0080090_0.598|GO:0043170_0.591|GO:0060255_0.591|GO:0009058_0.587|GO:0009889_0.587|GO:0031326_0.587|GO:0044249_0.587|GO:0009059_0.581|GO:0010556_0.581|GO:0006139_0.578|GO:0016070_0.578|GO:0019219_0.578|GO:0051252_0.578|GO:0090304_0.578|GO:0010467_0.572|GO:0010468_0.572|GO:0006351_0.569|GO:0032774_0.569|GO:0034654_0.569|GO:0141187_0.569|GO:0006355_0.564|GO:2001141_0.564|GO:0048699_0.563|GO:0005622_0.561|GO:0003677_0.551|GO:0048518_0.545|GO:0030182_0.544|GO:0043226_0.541|GO:0043565_0.539|GO:0043229_0.529|GO:0048522_0.517|GO:0003690_0.510|GO:1990837_0.510|GO:0009653_0.507
|
IPR001356+372-432_374-436_375-431_375-433+|IPR001781+240-301_241-294_242-299_302-359_302-366_303-339_303-361+|IPR009057+370-435+|IPR017970+407-430+|IPR050453+202-591+
|
SM00132+241-294_302-359+|SM00389+374-436+
|
PF00046+375-431+Homeodomain|PF00412+242-299_303-361+LIM_domain
|
G3DSA:1.10.10.60:FF:000219+373-436+LIM/homeobox_protein_Lhx3
|
PTHR24208+202-591+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-154;370-879
|
1.000
|
155-369
|
2jtn_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.961
|
92605.050
|
8.300
|
36.000
|
18.430
|
10.466
|
48.350
|
51.650
|
12.742
|
5.688
|
58.931
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
1265.751
|
509.772
|
507.308
|
188.226
|
56.949
|
149.954
|
145.670
|
198.705
|
179.293
|
4744.474
|
2787.968
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.236
|
-1.575
|
-1.322
|
-1.755
|
1.410
|
— | — | — |
-4.845
|
— |
-5.865
|
— | — |
No JSON data available for plots.