Hg_chrom4_TN10mRNA_8788
Organism: Heterodera glycines Gene Locus: chr4:11941371-11946576 Feature type: polypeptideProtein Sequence
Length: 331
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.581 | 0.632 | 0.769 | 0.625 | 0.806 | 1.704 | 0.683 | 1.813 | 0.739 | 1.347 | 0.595 | 1.777 | 1.259 | 0.813 | 1.541 | 0.777 | 1.04 | 1.007 | 0.697 | 0.267 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8256
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.834
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
7-27
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.082
|
0.935
|
0.042
|
0.203
|
0.017
|
0.078
|
0.076
|
0.011
|
0.053
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009027
|
1.000
|
1.000
|
Hsc_gene_11568.t1
|
Hsc_gene_11568.t1
|
— |
A0PJR5.2 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial [Danio rerio]
|
KAI1712164.1 enoyl-CoA hydratase/isomerase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.724|GO:0005575_0.697|GO:0110165_0.675|GO:0009987_0.640|GO:0003674_0.603|GO:0016020_0.580|GO:0005622_0.516
|
IPR001753+76-322+|IPR014748+265-323+|IPR029045+66-323+|IPR052377+48-326+
|
— |
PF00378+76-322+Enoyl-CoA_hydratase/isomerase
|
— |
PTHR43602+48-326+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
324-331
|
1.000
|
1-323
|
3myb_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.713
|
36436.840
|
9.584
|
14.000
|
24.169
|
9.970
|
45.317
|
54.683
|
15.106
|
9.063
|
50.755
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightcyan
|
919.476
|
701.649
|
687.847
|
1135.090
|
1437.043
|
1086.493
|
1051.798
|
611.043
|
381.303
|
1220.121
|
860.627
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.258
|
0.557
|
0.831
|
0.308
|
-0.388
|
— |
-0.937
|
0.925
|
— | — | — | — | — |
No JSON data available for plots.