Hg_chrom4_TN10mRNA_8791
Organism: Heterodera glycines Gene Locus: chr4:11959045-11982191 Feature type: polypeptideProtein Sequence
Length: 2,041
(Signal peptide: 1-42)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 0.946 | 0.837 | 3.024 | 0.759 | 1.734 | 1.225 | 1.2 | 0.773 | 0.636 | 0.49 | 1.182 | 0.531 | 1.818 | 0.96 | 1.029 | 0.875 | 0.995 | 0.339 | 0.533 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8259
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.956
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KHKR,KKKK,KRRP,TAKRRRFSSPQRRRSRIWHRKKRHSPQIDEIVPKNGRRHKK
|
— | — | — | — |
1-42
|
0.781
|
0.942
|
0.000
|
0.000
|
0.121
|
0.109
|
0.040
|
0.273
|
0.034
|
0.043
|
0.061
|
0.037
|
0.305
|
0.946
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009028
|
1.000
|
1.000
|
Hsc_gene_11584.t1
|
Hsc_gene_11584.t1
|
— | — |
KAI1712167.1 EB module domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR000742+183-218_227-263_366-413_519-555_578-610_619-651_661-693_703-736_746-778_788-821_831-863_872-906_1123-1158_1173-1205_1233-1266_1289-1315_1371-1405_1425-1459_1601-1636_1681-1715_1789-1868_1986-2021+|IPR006149+206-262_354-407_482-538_558-609_606-650_645-692_688-735_738-777_814-862_1157-1204_1227-1265_1311-1358_1347-1399_1596-1631+|IPR006150+567-599_607-640_648-682_727-767_775-810_860-895_1155-1194_1312-1348_1356-1392_1581-1623+|IPR009030+1433-1715+|IPR052740+753-914+
|
SM00181+183-218_227-263_366-413_519-555_578-610_619-651_661-693_703-736_746-778_788-821_831-863_872-906_1123-1158_1173-1205_1233-1266_1289-1315_1371-1405_1425-1459_1601-1636_1681-1715_1789-1868_1986-2021+|SM00289+567-599_607-640_648-682_727-767_775-810_860-895_1155-1194_1312-1348_1356-1392_1581-1623+
|
PF01683+206-262_354-407_482-538_558-609_606-650_645-692_688-735_738-777_814-862_1157-1204_1227-1265_1311-1358_1347-1399_1596-1631+EB_module
|
— |
PTHR45985+753-914+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
47-129;910-1126;1636-1774;1915-1977;2015-2041
|
5.000
|
1-46;130-909;1127-1635;1775-1914;1978-2014
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.867
|
215350.330
|
6.447
|
-0.500
|
19.500
|
6.565
|
42.871
|
57.129
|
10.338
|
9.162
|
63.988
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkmagenta
|
2410.015
|
160.498
|
349.691
|
295.263
|
115.956
|
199.821
|
193.448
|
118.386
|
1270.685
|
9053.404
|
5717.953
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.895
|
0.743
|
— |
-1.378
|
0.797
|
— |
-0.859
|
0.850
|
— | — |
-5.688
|
— | — |