Hg_chrom4_TN10mRNA_8801
Organism: Heterodera glycines Gene Locus: chr4:12039300-12048598 Feature type: polypeptideProtein Sequence
Length: 709
(Signal peptide: 1-36)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.033 | 1.41 | 0.436 | 0.632 | 0.705 | 2.206 | 0.823 | 2.398 | 1.034 | 1.048 | 0.812 | 2.074 | 0.979 | 1.166 | 0.576 | 1.511 | 0.925 | 0.427 | 0.434 | 0.871 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8269
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.497
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
RKRKPRGGITKMEESLMKARKNANGGGSQKKSGKK
|
— | — | — | — |
1-36
|
— |
0.997
|
— |
0.000
|
0.756
|
0.133
|
0.016
|
0.408
|
0.062
|
0.027
|
0.053
|
0.011
|
0.082
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003962
|
2.000
|
1.000
|
Hsc_gene_4645.t1
|
Hsc_gene_4645.t1
|
— |
P52168.1 GATA-binding factor A [Drosophila melanogaster]
|
KAF7633067.1 GATA-type domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003700|GO:0006355|GO:0006357|GO:0008270|GO:0043565
|
GO:0008150_0.891|GO:0009987_0.830|GO:0003674_0.806|GO:0065007_0.773|GO:0005488_0.762|GO:0050789_0.761|GO:0050794_0.749|GO:0005575_0.739|GO:0032502_0.737|GO:0048856_0.737|GO:0110165_0.736|GO:0032501_0.702|GO:0048518_0.660|GO:0005622_0.655|GO:0048522_0.647|GO:0043226_0.645|GO:0016020_0.642|GO:0007275_0.636|GO:0030154_0.635|GO:0048869_0.635|GO:0008152_0.633|GO:0019222_0.633|GO:0031323_0.633|GO:0044237_0.633|GO:0044238_0.626|GO:0080090_0.626|GO:0097159_0.626|GO:0043170_0.625|GO:0043229_0.623|GO:0060255_0.620|GO:0009058_0.617|GO:0044249_0.615|GO:0003676_0.613|GO:0009059_0.613|GO:0009889_0.609|GO:0010467_0.609|GO:0031326_0.609|GO:0010468_0.594|GO:0010556_0.594|GO:0048731_0.593|GO:0006139_0.587|GO:0034654_0.587|GO:0003677_0.583|GO:0043565_0.583|GO:0050896_0.582|GO:0016070_0.579|GO:0090304_0.579|GO:0141187_0.575|GO:0019219_0.574|GO:0032774_0.574|GO:0051252_0.574|GO:0006351_0.569|GO:0006355_0.569|GO:2001141_0.569|GO:0048513_0.557|GO:0009893_0.553|GO:0043227_0.549|GO:0031325_0.546|GO:0010604_0.543|GO:0043231_0.543|GO:0009891_0.535|GO:0031328_0.531|GO:0010557_0.521|GO:0045935_0.512|GO:0051254_0.511|GO:0005515_0.503|GO:0045893_0.502|GO:1902680_0.502
|
IPR000679+353-403_353-406_355-372_358-409_359-383_359-391_373-390+|IPR013088+352-411+|IPR039355+48-533+
|
SM00401+353-403+
|
PF00320+359-391+GATA_zinc_finger
|
G3DSA:3.30.50.10:FF:000032+349-411+Transcription_factor_GATA-3
|
PTHR10071+48-533+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
202-586
|
2.000
|
1-201;587-709
|
8vg1_T
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.933
|
77664.440
|
8.817
|
28.000
|
19.605
|
11.848
|
50.494
|
49.506
|
12.976
|
6.629
|
51.199
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
789.328
|
196.536
|
124.494
|
54.902
|
62.838
|
113.352
|
156.481
|
97.906
|
102.339
|
3074.116
|
1800.498
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.890
|
-1.977
|
-1.071
|
— |
0.866
|
0.475
|
— |
0.818
|
-5.030
|
— |
-4.983
|
— | — |