SCN Proteipedia

Hg_chrom4_TN10mRNA_8803

Organism: Heterodera glycines Gene Locus: chr4:12051041-12066483 Feature type: polypeptide

Protein Sequence

Length: 1,098

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.773	1.123	1.043	1.225	0.896	1.401	0.477	1.275	1.133	1.489	1.228	1.5	1.265	0.648	0.874	0.755	1.045	0.869	1.051	1.205	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8271	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	12-ppJ2_pJ2_J3_Females	0.982

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	—	—	—	—	—	—	—	0.001	—	—	0.139	0.139	0.020	0.348	0.551	0.495	0.607	0.011	0.581	0.049

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000577	3.000	4.000	Hsc_gene_1256.t1;Hsc_gene_4618.t1;Hsc_gene_4618.t2;Hsc_gene_4620.t1	Hsc_gene_4620.t1	—	P27715.4 Phorbol ester/diacylglycerol-binding protein unc-13 [Caenorhabditis elegans]	KAI3413378.1 Phorbol ester/diacylglycerol-binding protein unc-13, partial [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0007268\|GO:0019992	GO:0005575_0.908\|GO:0110165_0.908\|GO:0008150_0.855\|GO:0009987_0.809\|GO:0016020_0.759\|GO:0065007_0.757\|GO:0003674_0.748\|GO:0050789_0.731\|GO:0071944_0.729\|GO:0005886_0.712\|GO:0050794_0.706\|GO:0051179_0.662\|GO:0006810_0.654\|GO:0051234_0.654\|GO:0071840_0.625\|GO:0016043_0.624\|GO:0030054_0.591\|GO:0051641_0.573\|GO:0006996_0.563\|GO:0005622_0.556\|GO:0061024_0.555\|GO:0016192_0.551\|GO:0016050_0.543\|GO:0045202_0.535\|GO:0046903_0.535\|GO:0140352_0.533\|GO:0032940_0.530\|GO:0007154_0.529\|GO:0023052_0.522\|GO:0061025_0.521\|GO:0048284_0.520\|GO:0006887_0.518\|GO:0006906_0.518\|GO:0090174_0.518\|GO:0099500_0.518\|GO:0140029_0.518\|GO:0048518_0.514\|GO:0050896_0.510\|GO:0043226_0.509\|GO:0045055_0.509	IPR000008+106-234_124-231_124-232+\|IPR010439+455-545_457-942+\|IPR014770+536-679+\|IPR014772+782-942+\|IPR027080+6-75+\|IPR035892+108-254_125-260+	SM00239+124-231+\|SM01145+455-545+	PF00168+124-232+C2_domain\|PF06292+457-942+MUN_domain	G3DSA:1.10.357.50:FF:000001+578-748+Protein_unc-13_homolog_B\|G3DSA:2.60.40.150:FF:000002+108-254+Protein_unc-13_homolog_B	PTHR10480+6-75+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1098	5uf7_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.616	126095.580	8.196	28.000	26.047	12.568	47.996	52.004	14.936	11.111	45.537

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	blue	1143.083	4.876	12.121	30.529	9.328	8.505	30.106	4.678	66.964	4913.210	2836.247

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.083	2.506	1.442	-1.738	—	1.831	—	2.824	-6.328	—	-8.611	—	—

No JSON data available for plots.

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