Hg_chrom4_TN10mRNA_8806
Organism: Heterodera glycines Gene Locus: chr4:12081007-12087270 Feature type: polypeptideProtein Sequence
Length: 641
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.816 | 1.306 | 1.333 | 0.538 | 1.04 | 1.16 | 0.854 | 1.248 | 0.728 | 1.307 | 0.756 | 2.202 | 1.17 | 0.81 | 1.242 | 1.07 | 0.997 | 0.709 | 0.6 | 0.826 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8274
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.314
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.500
|
0.221
|
0.013
|
0.470
|
0.121
|
0.245
|
0.166
|
0.091
|
0.268
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000142
|
11.000
|
2.000
|
Hsc_gene_11567.t1;Hsc_gene_23079.t1
|
— | — |
Q20500.1 Intracellular phospholipase A2 [Caenorhabditis elegans]
|
KAI1725474.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006629|GO:0047499
|
GO:0008150_0.888|GO:0005575_0.759|GO:0110165_0.748|GO:0003674_0.723|GO:0009987_0.706|GO:0005622_0.643|GO:0050896_0.604|GO:0016020_0.599|GO:0008152_0.554|GO:0044238_0.554|GO:0065007_0.538|GO:0050789_0.514|GO:0043226_0.502|GO:0050794_0.502
|
IPR002110+12-90_25-54_25-57_59-88_59-91_92-122+|IPR002641+233-409_233-412+|IPR016035+231-508+|IPR036770+3-133_12-126+|IPR047148+450-520+
|
SM00248+25-54_59-88_92-122+
|
PF01734+233-409+Patatin-like_phospholipase|PF12796+12-90+Ankyrin_repeats_(3_copies)
|
— |
PTHR24139+450-520+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
130-183;527-641
|
2.000
|
1-129;184-526
|
9ioq_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.608
|
71758.630
|
5.640
|
-8.000
|
27.145
|
10.296
|
50.858
|
49.142
|
13.573
|
13.573
|
51.170
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1168.654
|
628.479
|
769.426
|
709.154
|
815.817
|
716.595
|
747.324
|
876.599
|
309.641
|
2906.856
|
1793.764
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.171
|
— | — | — | — |
-3.333
|
— | — | — | — |
No JSON data available for plots.