Hg_chrom4_TN10mRNA_8808
Organism: Heterodera glycines Gene Locus: chr4:12107369-12108449 Feature type: polypeptideProtein Sequence
Length: 102
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.798 | 0.684 | 0.713 | 0.338 | 1.471 | 1.257 | 0.584 | 0.98 | 2.397 | 0.927 | 0.891 | 0.577 | 0.545 | 0.943 | 1.0 | 1.12 | 1.607 | 1.04 | 0.754 | 0.865 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8276
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.944
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
KRAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.077
|
0.030
|
0.015
|
0.141
|
0.140
|
0.671
|
0.399
|
0.096
|
0.929
|
0.334
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009036
|
1.000
|
1.000
|
Hsc_gene_4623.t1
|
Hsc_gene_4623.t1
|
— | — |
XP_002643514.2 Protein CBG16188 [Caenorhabditis briggsae];CAP34214.2 Protein CBG16188 [Caenorhabditis briggsae]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.933|GO:0110165_0.928|GO:0008150_0.912|GO:0009987_0.850|GO:0065007_0.824|GO:0016020_0.820|GO:0050789_0.804|GO:0050794_0.784|GO:0048518_0.728|GO:0071840_0.728|GO:0071944_0.725|GO:0016043_0.723|GO:0048522_0.710|GO:0005886_0.704|GO:0044085_0.689|GO:0022607_0.685|GO:0051128_0.679|GO:0051130_0.675|GO:0034329_0.670|GO:0034330_0.670|GO:0044087_0.670|GO:0044089_0.670|GO:1901888_0.670|GO:1901890_0.670|GO:0032991_0.659|GO:0098796_0.575|GO:0030054_0.569|GO:0098797_0.545|GO:0005911_0.540|GO:0035003_0.540|GO:0043296_0.540|GO:0045177_0.540|GO:0070161_0.540
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-102
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.493
|
11358.930
|
5.700
|
-1.000
|
25.490
|
7.843
|
50.980
|
49.020
|
12.745
|
12.745
|
49.020
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
707.763
|
2667.240
|
987.379
|
376.649
|
213.187
|
387.914
|
329.882
|
2422.910
|
158.693
|
208.007
|
186.872
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.661
|
-2.961
|
-1.283
|
-0.853
|
0.878
|
-0.226
|
2.548
|
-2.741
|
— | — | — | — | — |
No JSON data available for plots.