Hg_chrom4_TN10mRNA_8810
Organism: Heterodera glycines Gene Locus: chr4:12115518-12117303 Feature type: polypeptideProtein Sequence
Length: 144
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.888 | 0.807 | 0.631 | 0.0 | 1.62 | 2.137 | 0.331 | 0.694 | 0.772 | 1.689 | 0.631 | 2.042 | 2.315 | 0.935 | 0.85 | 0.794 | 0.911 | 1.263 | 1.603 | 0.204 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8278
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.082
|
— | — |
0.176
|
0.529
|
0.044
|
0.217
|
0.787
|
0.267
|
0.614
|
0.062
|
0.127
|
0.119
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009037
|
1.000
|
1.000
|
Hsc_gene_4627.t1
|
Hsc_gene_4627.t1
|
— |
O17287.1 Mitochondrial import receptor subunit TOM22 homolog [Caenorhabditis elegans]
|
KAH7727983.1 Protein TOMM-22 [Aphelenchus avenae]
|
No
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005741|GO:0006886
|
GO:0005575_0.844|GO:0110165_0.844|GO:0016020_0.775|GO:0005622_0.769|GO:0005737_0.755|GO:0043226_0.708|GO:0043229_0.693|GO:0043227_0.690|GO:0043231_0.677|GO:0008150_0.667|GO:0009987_0.622|GO:0031090_0.576|GO:0003674_0.550|GO:0051179_0.517|GO:0031967_0.515|GO:0051234_0.514|GO:0006810_0.506|GO:0005739_0.505
|
IPR005683+44-141_54-135+
|
— |
PF04281+54-135+Mitochondrial_import_receptor_subunit_Tom22
|
— |
PTHR12504+44-141+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-144
|
7vby_I
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.813
|
16621.130
|
4.509
|
-6.000
|
22.917
|
12.500
|
45.833
|
54.167
|
9.722
|
13.194
|
41.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
829.621
|
383.021
|
580.318
|
1081.562
|
1181.020
|
833.944
|
697.358
|
368.568
|
427.084
|
1387.107
|
975.668
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.369
|
1.360
|
1.007
|
— |
-0.487
|
-0.248
|
-1.284
|
1.063
|
— | — | — | — | — |
No JSON data available for plots.