Hg_chrom4_TN10mRNA_8812
Organism: Heterodera glycines Gene Locus: chr4:12122615-12128349 Feature type: polypeptideProtein Sequence
Length: 496
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.68 | 1.125 | 1.1 | 0.626 | 1.411 | 1.706 | 1.104 | 1.21 | 1.254 | 0.817 | 1.191 | 1.779 | 1.12 | 0.659 | 1.111 | 0.835 | 0.364 | 1.375 | 0.465 | 0.415 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8280
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KRKL,KGGGGGQKHRAGGGGGRRSQAPQRNR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.524
|
0.127
|
0.003
|
0.745
|
0.084
|
0.097
|
0.107
|
0.003
|
0.069
|
0.016
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009038
|
1.000
|
1.000
|
Hsc_gene_4629.t1
|
Hsc_gene_19384.t1;Hsc_gene_4624.t1;Hsc_gene_4624.t2;Hsc_gene_4629.t1
|
— |
F1QLR3.1 RNA-binding protein FXR1 [Danio rerio]
|
KAH7728128.1 fragile X mental retardation 1 [Aphelenchus avenae]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723|GO:0003729|GO:0006417
|
GO:0005575_0.788|GO:0008150_0.787|GO:0110165_0.783|GO:0005622_0.718|GO:0043226_0.664|GO:0016020_0.657|GO:0003674_0.656|GO:0043229_0.638|GO:0005737_0.633|GO:0009987_0.624|GO:0005488_0.614|GO:0032502_0.602|GO:0048856_0.602|GO:0032501_0.531|GO:0097159_0.519|GO:0007275_0.511|GO:0065007_0.511|GO:0003676_0.504|GO:0003723_0.504
|
IPR004087+224-296_297-363+|IPR004088+228-292_297-359+|IPR036612+224-291_225-296_292-366_296-365+|IPR040148+2-484+|IPR040472+132-215+|IPR041560+2-45+
|
SM00322+224-296_297-363+
|
PF00013+228-292_297-359+KH_domain|PF17904+132-215+FMRP_KH0_domain|PF18336+2-45+Fragile_X_messenger_ribonucleoprotein_1,_Tudor_domain
|
— |
PTHR10603+2-484+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
372-496
|
1.000
|
1-371
|
2qnd_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
55260.710
|
6.508
|
0.000
|
30.242
|
8.468
|
49.798
|
50.202
|
15.726
|
14.516
|
48.387
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
5696.718
|
4864.079
|
6009.037
|
6550.865
|
7989.189
|
6667.576
|
8704.068
|
3904.488
|
4848.536
|
4528.252
|
4665.517
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.292
|
0.233
|
0.254
|
-0.246
|
0.395
|
-0.878
|
1.300
|
— | — | — | — | — |
No JSON data available for plots.