Hg_chrom4_TN10mRNA_8814
Organism: Heterodera glycines Gene Locus: chr4:12144820-12151424 Feature type: polypeptideProtein Sequence
Length: 450
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.724 | 1.395 | 1.293 | 0.613 | 0.741 | 0.969 | 0.608 | 1.556 | 1.679 | 1.321 | 0.808 | 1.046 | 1.481 | 1.239 | 0.998 | 0.698 | 1.056 | 0.64 | 1.88 | 0.98 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8282
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.961
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
mitochondria
|
— |
45-74
|
0.868
|
— | — |
1-24
|
0.922
|
1.000
|
0.000
|
0.000
|
0.217
|
0.348
|
0.017
|
0.398
|
0.240
|
0.218
|
0.157
|
0.146
|
0.201
|
0.803
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009040
|
1.000
|
1.000
|
Hsc_gene_4634.t1
|
Hsc_gene_4634.t1;Hsc_gene_4636.t1
|
— |
Q19076.1 Intestinal acid phosphatase [Caenorhabditis elegans]
|
KAF7636024.1 Acid phosphatase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.739|GO:0110165_0.734|GO:0008150_0.719|GO:0009987_0.635|GO:0003674_0.601|GO:0016020_0.597|GO:0003824_0.528|GO:0005622_0.524
|
IPR000560+29-380+|IPR029033+28-430_28-433+|IPR033379+30-44+|IPR050645+8-412+
|
— |
PF00328+29-380+Histidine_phosphatase_superfamily_(branch_2)
|
— |
PTHR11567+8-412+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
440-450
|
1.000
|
1-439
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
51553.840
|
6.612
|
1.000
|
24.889
|
14.222
|
46.000
|
54.000
|
13.333
|
11.556
|
48.222
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightyellow
|
1713.799
|
2.299
|
4.202
|
226.525
|
134.693
|
540.730
|
1174.207
|
254.238
|
81.292
|
6560.564
|
3783.733
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
6.488
|
5.854
|
-0.784
|
2.018
|
1.129
|
— |
2.357
|
-6.454
|
— |
-5.073
|
— | — |