Hg_chrom4_TN10mRNA_8815
Organism: Heterodera glycines Gene Locus: chr4:12164370-12165271 Feature type: polypeptideProtein Sequence
Length: 110
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.74 | 0.846 | 1.488 | 0.627 | 1.212 | 0.932 | 0.541 | 0.909 | 1.01 | 1.351 | 0.964 | 2.139 | 1.263 | 1.399 | 0.928 | 1.429 | 0.447 | 1.102 | 0.0 | 0.535 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8283
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.367
|
0.313
|
0.170
|
0.641
|
0.456
|
0.352
|
0.153
|
0.188
|
0.236
|
0.222
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009041
|
1.000
|
1.000
|
Hsc_gene_4637.t1
|
Hsc_gene_4637.t1
|
— |
Q9TT99.1 Copper transport protein ATOX1 [Canis lupus familiaris]
|
XP_059607652.1 copper transport protein ATOX1 [Phlebotomus argentipes]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046872
|
GO:0005575_0.934|GO:0110165_0.926|GO:0005622_0.846|GO:0005737_0.799|GO:0008150_0.602|GO:0016020_0.557|GO:0009987_0.533|GO:0043226_0.518|GO:0043229_0.507
|
IPR006121+9-50_13-48+|IPR036163+7-52+|IPR051881+5-51+
|
— |
PF00403+9-50+Heavy-metal-associated_domain
|
— |
PTHR46365+5-51+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-110
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.497
|
12225.930
|
4.679
|
-4.000
|
28.182
|
8.182
|
48.182
|
51.818
|
12.727
|
15.455
|
51.818
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
1312.400
|
955.391
|
785.431
|
1048.588
|
1585.364
|
2238.573
|
1508.199
|
994.965
|
1069.660
|
1520.811
|
1327.461
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.513
|
— |
0.526
|
0.564
|
0.513
|
-0.559
|
-1.275
|
0.744
|
— | — | — | — | — |
No JSON data available for plots.