Hg_chrom4_TN10mRNA_8817
Organism: Heterodera glycines Gene Locus: chr4:12170801-12183595 Feature type: polypeptideProtein Sequence
Length: 1,071
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.717 | 1.281 | 1.07 | 1.481 | 1.058 | 0.862 | 0.667 | 1.261 | 1.328 | 1.161 | 1.245 | 1.373 | 1.323 | 0.952 | 1.372 | 0.92 | 0.842 | 0.566 | 1.149 | 0.577 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8285
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
AERRRQKRQAKPKLNK,KRWQLEACKMMPTVMRCKK,RRSPRVPLESIADISKRKG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.343
|
0.210
|
0.066
|
0.206
|
0.124
|
0.057
|
0.147
|
0.064
|
0.268
|
0.654
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000861
|
2.000
|
4.000
|
Hsc_gene_23949.t1;Hsc_gene_23949.t2;Hsc_gene_23949.t3;Hsc_gene_9605.t1
|
— | — |
Q18206.2 Zinc metalloproteinase nas-36 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.785|GO:0005575_0.629|GO:0110165_0.626|GO:0003674_0.579|GO:0032501_0.569
|
IPR000742+779-790+|IPR000859+798-925+|IPR001506+564-755_572-755_594-612_646-664_665-682_703-718_741-754+|IPR006026+569-708+|IPR024079+508-757+
|
SM00235+569-708+
|
PF01400+572-755+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+524-844+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1071
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.846
|
122006.070
|
8.649
|
42.500
|
29.692
|
10.738
|
50.140
|
49.860
|
17.460
|
12.232
|
47.712
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.