Hg_chrom4_TN10mRNA_8818
Organism: Heterodera glycines Gene Locus: chr4:12191633-12194367 Feature type: polypeptideProtein Sequence
Length: 337
(Signal peptide: 1-32)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.828 | 1.38 | 1.025 | 0.512 | 0.791 | 0.761 | 0.742 | 0.593 | 1.517 | 1.283 | 1.214 | 2.269 | 1.154 | 0.856 | 0.908 | 0.763 | 1.022 | 1.259 | 0.228 | 0.96 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8286
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — |
1-32
|
— |
0.969
|
— |
0.000
|
0.390
|
0.479
|
0.080
|
0.524
|
0.227
|
0.415
|
0.315
|
0.005
|
0.440
|
0.185
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009042
|
1.000
|
1.000
|
Hsc_gene_4638.t1
|
Hsc_gene_4638.t1
|
— |
Q9SF47.1 Phosphatidate phosphatase PAH1 [Arabidopsis thaliana]
|
KAG9510298.1 Stress-induced-phosphoprotein 1 [Fragariocoptes setiger]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.785|GO:0110165_0.780|GO:0008150_0.729|GO:0009987_0.666|GO:0005622_0.643|GO:0005737_0.611|GO:0003674_0.596|GO:0016020_0.577|GO:0043226_0.543|GO:0008152_0.533|GO:0043229_0.531|GO:0043227_0.509|GO:0044238_0.507|GO:0044237_0.505
|
IPR013209+133-334+|IPR023214+164-260+|IPR026058+39-105+|IPR031315+166-308+|IPR036412+160-297+
|
SM00775+166-308+
|
PF08235+133-334+LNS2_(Lipin/Ned1/Smp2)
|
— |
PTHR12181+39-105+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-337
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.804
|
37499.650
|
9.193
|
9.000
|
24.036
|
8.902
|
44.510
|
55.490
|
13.650
|
10.386
|
50.742
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
421.160
|
35.165
|
448.191
|
496.034
|
59.344
|
13.885
|
19.579
|
97.457
|
1591.880
|
210.045
|
802.260
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.445
|
3.682
|
0.255
|
-3.094
|
-2.081
|
— |
2.727
|
-2.181
|
— |
-1.516
|
— | — | — |