Hg_chrom4_TN10mRNA_8827
Organism: Heterodera glycines Gene Locus: chr4:12233638-12233932 Feature type: polypeptideProtein Sequence
Length: 78
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.596 | 0.894 | 1.166 | 0.0 | 1.282 | 1.972 | 0.916 | 0.641 | 1.994 | 1.559 | 1.554 | 0.754 | 0.712 | 0.493 | 1.047 | 0.366 | 1.471 | 0.777 | 0.0 | 0.377 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8295
|
— | — |
1.667
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
3.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — |
4G06|MT0123311#tn8canujg17452t1
|
Hsc_gene_15525;Hsc_gene_15528
|
— | — |
15-Not_Clustered
|
0.659
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.740
|
0.073
|
0.061
|
0.364
|
0.417
|
0.080
|
0.109
|
0.023
|
0.149
|
0.432
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001047
|
4.000
|
1.000
|
Hsc_gene_12320.t1
|
Hsc_gene_12320.t1;Hsc_gene_12320.t2;Hsc_gene_15525.t1;Hsc_gene_15528.t1;Hsc_gene_18450.t1;Hsc_gene_18450.t2;Hsc_gene_20056.t1;Hsc_gene_20056.t2;Hsc_gene_20056.t3;Hsc_gene_21227.t1;Hsc_gene_4135.t1
|
F25B5.4;ZK1010.1
|
P69326.2 Ubiquitin [Triticum aestivum]
|
CAL30085.1 polyubiquitin [Globodera pallida]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.902|GO:0110165_0.897|GO:0005622_0.806|GO:0043226_0.709|GO:0043229_0.707|GO:0005737_0.694|GO:0016020_0.643|GO:0003674_0.577|GO:0043227_0.574|GO:0043231_0.558|GO:0008150_0.514
|
IPR000626+1-72_1-76_3-74+|IPR019954+27-52+|IPR019956+11-31_32-52_53-74+|IPR029071+1-77+|IPR050158+1-76+
|
SM00213+1-72+
|
PF00240+3-74+Ubiquitin_family
|
G3DSA:3.10.20.90:FF:000016+1-76+Polyubiquitin_3
|
PTHR10666+1-76+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-78
|
9cai_Cm
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.586
|
8765.090
|
8.601
|
1.500
|
30.769
|
5.128
|
53.846
|
46.154
|
16.667
|
14.103
|
42.308
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
114.573
|
13.271
|
7.336
|
9.491
|
16.209
|
35.864
|
98.311
|
419.353
|
2.132
|
274.719
|
157.896
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.087
|
— | — | — |
1.163
|
1.468
|
3.441
|
-1.946
|
-7.424
|
— |
-3.838
|
— | — |
No JSON data available for plots.