Hg_chrom4_TN10mRNA_8828
Organism: Heterodera glycines Gene Locus: chr4:12238277-12242333 Feature type: polypeptideProtein Sequence
Length: 339
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.269 | 0.96 | 0.805 | 0.814 | 0.934 | 1.135 | 1.089 | 1.475 | 1.245 | 1.076 | 0.447 | 1.388 | 0.901 | 0.794 | 1.084 | 0.759 | 1.451 | 1.475 | 0.0 | 0.174 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8296
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.824
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.401
|
0.376
|
0.038
|
0.819
|
0.138
|
0.259
|
0.178
|
0.184
|
0.091
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009045
|
1.000
|
1.000
|
Hsc_gene_4632.t1
|
Hsc_gene_4632.t1
|
— |
Q9H477.1 Ribokinase [Homo sapiens]
|
KAI1716425.1 pfkB family carbohydrate kinase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004747|GO:0006014|GO:0016301
|
GO:0008150_0.827|GO:0003674_0.782|GO:0009987_0.743|GO:0008152_0.691|GO:0003824_0.679|GO:0044238_0.660|GO:0044237_0.647|GO:0005575_0.637|GO:0110165_0.620|GO:0016740_0.598|GO:0005975_0.591|GO:0006793_0.585|GO:0006796_0.585|GO:0044281_0.574|GO:0016772_0.567|GO:0016301_0.563|GO:0016310_0.562|GO:0046835_0.557|GO:0016773_0.547|GO:0019200_0.540|GO:0005622_0.529|GO:0005737_0.508
|
IPR002139+29-50_56-75_128-141_197-212_241-252+|IPR002173+276-289+|IPR011611+26-328+|IPR011877+25-333_28-327_28-331+|IPR029056+13-337_26-332+
|
— |
PF00294+26-328+pfkB_family_carbohydrate_kinase
|
G3DSA:3.40.1190.20:FF:000010+23-336+Ribokinase
|
PTHR10584+23-331+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-21
|
1.000
|
22-339
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
35836.850
|
6.333
|
-1.000
|
21.239
|
6.785
|
43.953
|
56.047
|
11.209
|
10.029
|
58.997
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
704.875
|
215.726
|
925.072
|
1569.471
|
1216.891
|
642.469
|
934.615
|
1418.754
|
181.026
|
351.932
|
278.687
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.872
|
2.725
|
0.871
|
-0.399
|
-0.907
|
0.550
|
1.046
|
-0.463
|
— |
3.298
|
— | — | — |
No JSON data available for plots.