Hg_chrom4_TN10mRNA_8832
Organism: Heterodera glycines Gene Locus: chr4:12252047-12254348 Feature type: polypeptideProtein Sequence
Length: 139
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.589 | 1.004 | 0.392 | 0.248 | 0.839 | 4.058 | 0.428 | 1.079 | 0.959 | 0.972 | 0.545 | 1.693 | 0.2 | 1.107 | 1.175 | 1.028 | 0.826 | 1.199 | 0.0 | 0.635 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8300
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.915
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — |
19-69
|
0.760
|
— | — |
0.000
|
— | — |
0.664
|
0.118
|
0.008
|
0.376
|
0.163
|
0.166
|
0.221
|
0.013
|
0.102
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009047
|
1.000
|
1.000
|
Hsc_gene_4649.t1
|
Hsc_gene_4649.t1
|
— |
O35207.2 Cyclin-dependent kinase 2-associated protein 1 [Mus musculus]
|
KAI1724341.1 cyclin-dependent kinase 2-associated protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.923|GO:0005575_0.782|GO:0110165_0.767|GO:0005622_0.731|GO:0009987_0.707|GO:0065007_0.696|GO:0016020_0.684|GO:0050789_0.681|GO:0043226_0.675|GO:0050794_0.674|GO:0043229_0.663|GO:0043227_0.624|GO:0043231_0.592|GO:0043228_0.526|GO:0043232_0.523|GO:0005634_0.521|GO:0005737_0.510
|
IPR017266+20-134_23-135+
|
— |
PF09806+20-134+Cyclin-dependent_kinase_2-associated_protein
|
— |
PTHR22607+23-135+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-33;137-139
|
1.000
|
34-136
|
2kw6_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
15229.210
|
9.626
|
4.500
|
18.705
|
5.036
|
51.079
|
48.921
|
11.511
|
7.194
|
50.360
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1406.465
|
324.701
|
777.560
|
805.405
|
900.593
|
921.703
|
510.249
|
588.096
|
1865.888
|
2943.254
|
2481.526
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.032
|
1.173
|
0.158
|
0.129
|
— |
-0.845
|
-0.752
|
— | — | — | — | — | — |
No JSON data available for plots.