SCN Proteipedia

Hg_chrom4_TN10mRNA_8835

Organism: Heterodera glycines Gene Locus: chr4:12259401-12265214 Feature type: polypeptide

Protein Sequence

Length: 454

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.922	0.82	1.562	0.608	1.395	1.243	0.551	1.762	1.224	0.982	0.667	1.944	1.346	0.678	1.528	0.787	0.975	0.768	0.339	1.037	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8302	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	nucleus	—	RRLLTNFMQMMAKETRKRT	—	—	—	—	—	—	0.000	—	—	0.548	0.536	0.055	0.347	0.059	0.025	0.058	0.021	0.059	0.094

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003969	1.000	2.000	Hsc_gene_4651.t1;Hsc_gene_4651.t2	Hsc_gene_4651.t1;Hsc_gene_4651.t2	—	Q9Y606.3 Pseudouridylate synthase 1 homolog [Homo sapiens]	KAI6191616.1 TRNA pseudouridine synthase A, mitochondrial [Aphelenchoides bicaudatus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982\|GO:0031119	GO:0005575_0.808\|GO:0110165_0.800\|GO:0008150_0.772\|GO:0003674_0.760\|GO:0005622_0.749\|GO:0009987_0.717\|GO:0003824_0.646\|GO:0008152_0.628\|GO:0016020_0.622\|GO:0044238_0.608\|GO:0044237_0.595\|GO:0043170_0.588\|GO:0009058_0.586\|GO:0043226_0.579\|GO:0043229_0.565\|GO:0044249_0.562\|GO:0009059_0.558\|GO:0006139_0.550\|GO:0010467_0.548\|GO:0043227_0.538\|GO:0034654_0.536\|GO:0016853_0.531\|GO:0009982_0.527\|GO:0016866_0.527\|GO:0090304_0.527\|GO:0016070_0.525\|GO:0141187_0.525\|GO:0043412_0.524\|GO:0005737_0.519\|GO:0032774_0.519\|GO:0043231_0.515	IPR001406+32-376+\|IPR020094+37-162+\|IPR020095+163-376+\|IPR020097+204-312+\|IPR020103+45-321+\|IPR041708+50-311+	—	PF01416+204-312+tRNA_pseudouridine_synthase	G3DSA:3.30.70.580:FF:000002+37-162+tRNA_pseudouridine_synthase\|G3DSA:3.30.70.660:FF:000002+163-376+tRNA_pseudouridine_synthase	PTHR11142+32-376+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	360-454	1.000	1-359	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.810	52200.520	4.979	-15.000	32.379	12.335	52.203	47.797	15.419	16.960	46.476

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey60	1395.493	1141.499	954.452	1295.111	1534.668	1149.528	1484.688	832.489	961.226	2237.201	1690.355

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.488	—	0.549	0.213	-0.402	0.379	-0.572	0.977	—	—	—	—	—

No JSON data available for plots.

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