SCN Proteipedia

Hg_chrom4_TN10mRNA_8836

Organism: Heterodera glycines Gene Locus: chr4:12265394-12284259 Feature type: polypeptide

Protein Sequence

Length: 810

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.991	0.632	1.212	0.341	2.593	1.013	0.808	1.481	0.768	1.101	1.16	1.598	0.857	0.617	1.587	0.653	0.587	0.692	1.045	0.508	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8303	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	endoplasmic_reticulum\|golgi_apparatus	—	RHGKKEKRVP,RKPRMNLLKQRKKQI,RRRQKEEAKLKARKEAKKR,RRQKEEAKLKARKEAKKRQ,KKRQRMEMEKEEEDRQREK	22-47	0.997	12-32	0.989	—	—	0.000	—	—	0.388	0.072	0.017	0.172	0.749	0.164	0.667	0.028	0.109	0.146

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009048	1.000	1.000	Hsc_gene_4654.t1	Hsc_gene_4653.t1;Hsc_gene_4654.t1	—	Q8BSY0.1 Aspartyl/asparaginyl beta-hydroxylase [Mus musculus]	KAI6173787.1 TPR-REGION domain-containing protein [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0018193\|GO:0042264\|GO:0062101	GO:0005575_0.961\|GO:0110165_0.960\|GO:0008150_0.954\|GO:0005622_0.923\|GO:0005737_0.794\|GO:0016020_0.718\|GO:0009987_0.709\|GO:0043226_0.704\|GO:0005886_0.679\|GO:0071944_0.679\|GO:0043229_0.663\|GO:0065007_0.639\|GO:0003674_0.627\|GO:0050789_0.618\|GO:0043227_0.613\|GO:0050794_0.586\|GO:0032501_0.583\|GO:0043231_0.546\|GO:0048519_0.532\|GO:0008152_0.524\|GO:0043170_0.524\|GO:0044238_0.519\|GO:0048523_0.513\|GO:0019538_0.503	IPR002885+559-593+\|IPR007803+627-789+\|IPR011990+357-590_371-589+\|IPR019734+368-401_487-520_560-593+\|IPR027443+599-802+\|IPR039038+47-796+	SM00028+368-401_487-520_560-593+	PF05118+627-789+Aspartyl/Asparaginyl_beta-hydroxylase\|PF13432+372-412+Tetratricopeptide_repeat	—	PTHR12366+47-796+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-350;796-810	1.000	351-795	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.881	92939.540	4.723	-43.000	40.617	9.136	55.432	44.568	18.395	22.222	41.605

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1455.774	2446.625	2291.811	640.481	248.209	1173.997	214.167	2990.125	1260.579	1671.547	1495.418

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.325	-2.071	-1.729	-1.400	2.256	-2.445	1.247	-3.662	—	—	-2.518	—	—

No JSON data available for plots.

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