Hg_chrom4_TN10mRNA_8838
Organism: Heterodera glycines Gene Locus: chr4:12290639-12302332 Feature type: polypeptideProtein Sequence
Length: 803
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.072 | 0.869 | 1.087 | 0.859 | 0.623 | 1.597 | 0.356 | 1.743 | 0.747 | 1.464 | 0.642 | 1.978 | 1.487 | 1.054 | 1.245 | 0.978 | 0.98 | 1.057 | 1.437 | 0.513 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8305
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RIAKRLR,KRHPTDLSVRKQLGRIAKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.193
|
0.559
|
0.034
|
0.277
|
0.233
|
0.141
|
0.182
|
0.065
|
0.190
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003970
|
2.000
|
1.000
|
Hsc_gene_4659.t1
|
Hsc_gene_4625.t1;Hsc_gene_4659.t1;Hsc_gene_4660.t1;Hsc_gene_4662.t1;Hsc_gene_4690.t1
|
— |
Q9N390.1 General transcription and DNA repair factor IIH subunit TFB5 [Caenorhabditis elegans]
|
XP_024509740.1 Ubiquinol-cytochrome-c reductase complex assembly factor 1 [Strongyloides ratti];CEF70543.1 Ubiquinol-cytochrome-c reductase complex assembly factor 1 [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000439|GO:0006289|GO:0006367
|
GO:0008150_0.779|GO:0005575_0.773|GO:0110165_0.771|GO:0009987_0.737|GO:0005622_0.694|GO:0016020_0.693|GO:0043226_0.623|GO:0043229_0.613|GO:0043227_0.572|GO:0043231_0.556
|
IPR007129+590-756+|IPR009400+1-65_1-68+|IPR021150+613-755+|IPR035935+1-69_6-65+
|
SM01395+1-68+
|
PF03981+613-755+Ubiquinol-cytochrome_C_chaperone|PF06331+1-65+Transcription_factor_TFIIH_complex_subunit_Tfb5
|
— |
PTHR12184+590-756+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
158-285;774-803
|
2.000
|
1-157;286-773
|
8was_5
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.628
|
91103.830
|
8.012
|
19.000
|
23.537
|
12.453
|
46.326
|
53.674
|
13.823
|
9.714
|
49.689
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
darkmagenta
|
3196.484
|
888.452
|
1153.338
|
1015.634
|
1089.868
|
940.023
|
1564.790
|
953.487
|
3068.221
|
8831.357
|
6361.441
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.146
|
— | — | — |
-0.199
|
0.746
|
— |
0.858
|
— | — | — | — | — |
No JSON data available for plots.