SCN Proteipedia

Hg_chrom4_TN10mRNA_8839

Organism: Heterodera glycines Gene Locus: chr4:12303731-12316513 Feature type: polypeptide

Protein Sequence

Length: 1,430

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.114	0.894	0.826	0.531	0.874	0.968	0.833	0.769	1.414	1.408	0.54	1.563	1.671	0.699	1.299	0.979	1.066	1.113	0.861	0.617	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8306	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_Clustered	0.912

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane\|lysosome_vacuole	—	—	35-74	0.936	—	—	—	—	0.000	—	—	0.143	0.150	0.015	0.112	0.399	0.788	0.505	0.082	0.641	0.032

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003971	1.000	2.000	Hsc_gene_4663.t1;Hsc_gene_4663.t2	Hsc_gene_4663.t1;Hsc_gene_4663.t2	—	G5EE72.1 Multidrug resistance-associated protein 5 [Caenorhabditis elegans]	KAI3420849.1 Multidrug resistance-associated protein 5 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0016020\|GO:0016887\|GO:0055085\|GO:0140359	GO:0008150_0.888\|GO:0005575_0.875\|GO:0110165_0.869\|GO:0016020_0.842\|GO:0071944_0.814\|GO:0005886_0.809\|GO:0009987_0.731\|GO:0003674_0.652\|GO:0006810_0.648\|GO:0051179_0.648\|GO:0051234_0.648\|GO:0055085_0.599\|GO:0005215_0.532\|GO:0022857_0.532	IPR003439+524-754_551-682_1178-1412_1195-1342+\|IPR003593+560-841_1204-1396+\|IPR011527+133-406_137-419_851-1127_851-1139+\|IPR017871+656-670_1314-1328+\|IPR027417+525-777_546-753_1163-1411_1170-1391+\|IPR036640+59-436_120-427_815-1153_848-1157+\|IPR050173+39-1377+	SM00382+560-841_1204-1396+	PF00005+551-682_1195-1342+ABC_transporter\|PF00664+133-406_851-1127+ABC_transporter_transmembrane_region	G3DSA:1.20.1560.10:FF:000015+814-1154+multidrug_resistance-associated_protein_5_isoform_X1\|G3DSA:1.20.1560.10:FF:000162+97-436+Predicted_protein\|G3DSA:3.40.50.300:FF:000630+1163-1407+ATP-binding_cassette_(ABC)_transporter,_putative	PTHR24223+39-1377+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-34;464-510;1384-1430	2.000	35-463;511-1383	6bzr_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.675	157927.170	7.654	13.000	21.259	10.769	42.238	57.762	11.469	9.790	50.839

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	blue	2754.365	2693.772	1718.336	1679.184	2230.378	2013.438	3348.116	1265.557	978.476	5710.697	3682.602

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.877	-0.819	—	0.378	—	0.743	-0.776	1.546	-2.658	—	—	—	—

No JSON data available for plots.

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