Hg_chrom4_TN10mRNA_8843
Organism: Heterodera glycines Gene Locus: chr4:12345753-12355404 Feature type: polypeptideProtein Sequence
Length: 843
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.09 | 1.103 | 0.733 | 0.777 | 0.732 | 0.882 | 0.805 | 1.364 | 1.397 | 1.459 | 0.665 | 1.675 | 1.648 | 0.935 | 1.017 | 0.932 | 0.681 | 1.024 | 1.004 | 1.012 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8310
|
— |
Hg_chrom4_TN10gene_8310
|
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.405
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
37-57
|
0.943
|
— | — | — | — |
0.000
|
— | — |
0.104
|
0.079
|
0.079
|
0.124
|
0.265
|
0.475
|
0.308
|
0.044
|
0.820
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003972
|
2.000
|
1.000
|
Hsc_gene_4667.t1
|
Hsc_gene_4667.t1;Hsc_gene_4668.t1
|
— |
Q9VVH9.2 Solute carrier organic anion transporter family member 74D [Drosophila melanogaster]
|
KAF7625978.1 Solute carrier organic anion transporter family member [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0016020|GO:0055085
|
GO:0008150_0.909|GO:0005575_0.765|GO:0110165_0.765|GO:0009987_0.759|GO:0071944_0.713|GO:0016020_0.708|GO:0003674_0.705|GO:0006810_0.700|GO:0051179_0.700|GO:0051234_0.700|GO:0005886_0.691|GO:0055085_0.558|GO:0005215_0.528|GO:0022857_0.510
|
IPR002350+613-667+|IPR004156+9-831_10-100_261-800_270-771+|IPR036259+8-94_293-612_324-806+
|
— |
PF03137+10-100_270-771+Organic_Anion_Transporter_Polypeptide_(OATP)_family
|
— |
PTHR11388+9-831+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-843
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.771
|
93814.800
|
8.267
|
19.500
|
20.522
|
13.405
|
39.383
|
60.617
|
12.100
|
8.422
|
49.466
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
984.340
|
288.378
|
347.629
|
283.434
|
313.582
|
649.094
|
185.950
|
785.324
|
27.042
|
3216.182
|
1849.408
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.187
|
— |
1.065
|
-1.798
|
— |
-1.945
|
-5.551
|
— |
-2.811
|
— | — |
No JSON data available for plots.