SCN Proteipedia

Hg_chrom4_TN10mRNA_8849

Organism: Heterodera glycines Gene Locus: chr4:12393765-12411414 Feature type: polypeptide

Protein Sequence

Length: 624

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.969	0.745	0.845	1.105	0.801	1.438	0.801	1.042	0.962	1.083	1.214	1.225	0.89	1.171	0.556	1.19	1.156	1.214	1.603	0.424	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8315	—	Hg_chrom4_TN10gene_8315	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	15-Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.203	0.166	0.011	0.565	0.432	0.283	0.357	0.067	0.161	0.241

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003974	2.000	1.000	Hsc_gene_4673.t1	Hsc_gene_4672.t1;Hsc_gene_4673.t1	—	P40123.1 Adenylyl cyclase-associated protein 2 [Homo sapiens]	KAH7727898.1 adenylyl cyclase-associated protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003779\|GO:0007010\|GO:0008270	GO:0008150_0.947\|GO:0009987_0.870\|GO:0005575_0.832\|GO:0110165_0.808\|GO:0065007_0.686\|GO:0050789_0.671\|GO:0050794_0.652\|GO:0003674_0.647\|GO:0005622_0.595\|GO:0050896_0.568\|GO:0051716_0.533\|GO:0016020_0.520\|GO:0071840_0.519\|GO:0016043_0.518\|GO:0043226_0.518	IPR001837+9-482+\|IPR001841+572-614+\|IPR006599+367-404_405-442+\|IPR013083+529-624+\|IPR013912+330-481+\|IPR013992+14-45+\|IPR016098+325-485+\|IPR017901+330-464+\|IPR018106+14-26+\|IPR024766+559-614+\|IPR028417+458-469+\|IPR036222+51-220_51-246+\|IPR036223+331-482+\|IPR053950+55-213+	SM00673+367-404_405-442+	PF01213+14-45+CAP_N-terminal_conserved_motif\|PF08603+330-481+Adenylate_cyclase_associated_(CAP)_C_terminal\|PF12678+559-614+RING-H2_zinc_finger_domain\|PF21938+55-213+CAP,_N-terminal_domain	G3DSA:1.25.40.330:FF:000001+51-220+Adenylyl_cyclase-associated_protein\|G3DSA:2.160.20.70:FF:000001+325-487+Adenylyl_cyclase-associated_protein	PTHR10652+9-482+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-62;213-344	2.000	63-212;345-624	1k8f_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.826	67872.900	8.243	14.500	22.276	8.814	46.474	53.526	12.821	9.455	55.609

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	lightcyan	3073.972	2450.287	4057.473	2723.596	2771.823	3474.207	2914.237	7735.834	809.891	3043.412	2086.188

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.499	—	-0.467	—	0.340	-0.243	1.052	-1.266	—	—	—	—	—

No JSON data available for plots.

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