Hg_chrom4_TN10mRNA_8853
Organism: Heterodera glycines Gene Locus: chr4:12413909-12420064 Feature type: polypeptideProtein Sequence
Length: 672
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.917 | 1.28 | 0.92 | 0.821 | 0.744 | 1.221 | 1.01 | 2.232 | 1.091 | 1.066 | 0.676 | 2.101 | 1.405 | 0.973 | 1.124 | 0.68 | 0.951 | 0.654 | 1.832 | 0.963 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8318
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — |
33-88
|
0.879
|
— | — |
0.000
|
— | — |
0.198
|
0.324
|
0.148
|
0.516
|
0.358
|
0.516
|
0.367
|
0.136
|
0.306
|
0.214
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009056
|
1.000
|
1.000
|
Hsc_gene_4675.t1
|
Hsc_gene_4675.t1
|
— |
Q07085.3 Esterase CM06B1 [Caenorhabditis elegans]
|
KAI1732641.1 carboxylesterase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.857|GO:0003674_0.815|GO:0009987_0.741|GO:0005575_0.728|GO:0110165_0.715|GO:0016020_0.598|GO:0003824_0.546|GO:0043226_0.540|GO:0008152_0.518
|
IPR002018+59-572+|IPR019826+243-258+|IPR029058+53-607_59-566+
|
— |
PF00135+59-572+Carboxylesterase_family
|
— |
PTHR44590+52-663+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
571-623
|
2.000
|
1-570;624-672
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.770
|
75894.300
|
7.906
|
18.000
|
23.958
|
15.179
|
44.792
|
55.208
|
14.435
|
9.524
|
49.256
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
1489.884
|
1412.398
|
1872.320
|
937.475
|
1393.206
|
2539.894
|
1148.249
|
1712.748
|
770.327
|
1809.390
|
1364.078
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.177
|
-0.728
|
-0.889
|
0.540
|
0.881
|
-1.135
|
-0.681
|
-0.432
|
— | — | — | — | — |
No JSON data available for plots.