Hg_chrom4_TN10mRNA_8854
Organism: Heterodera glycines Gene Locus: chr4:12423679-12425897 Feature type: polypeptideProtein Sequence
Length: 233
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.749 | 1.098 | 1.327 | 0.74 | 0.715 | 1.1 | 0.613 | 1.288 | 1.144 | 1.392 | 1.105 | 2.272 | 1.431 | 0.413 | 1.401 | 1.165 | 0.774 | 0.78 | 0.66 | 1.01 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8319
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
KKKR,KRSDTLTGAYRWKKD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.227
|
0.207
|
0.018
|
0.326
|
0.211
|
0.471
|
0.414
|
0.038
|
0.432
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009057
|
1.000
|
1.000
|
Hsc_gene_4676.t1
|
Hsc_gene_4676.t1
|
— |
Q9CZE3.3 Ras-related protein Rab-32 [Mus musculus]
|
KAI6243953.1 Ras-related protein Rab [Aphelenchoides fujianensis]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.876|GO:0110165_0.869|GO:0005622_0.819|GO:0016020_0.756|GO:0043226_0.739|GO:0008150_0.732|GO:0043229_0.722|GO:0005737_0.719|GO:0043227_0.672|GO:0043231_0.652|GO:0009987_0.594|GO:0071944_0.502
|
IPR001806+12-233_19-187_20-190+|IPR005225+18-183+|IPR027417+6-231_13-199+
|
SM00173+15-190+|SM00174+20-190+|SM00175+18-190+|SM00176+23-232+
|
PF00071+19-187+Ras_family
|
G3DSA:3.40.50.300:FF:001447+8-180+Ras-related_protein_Rab-1B
|
PTHR24073+17-218+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-233
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.782
|
26709.670
|
9.095
|
9.000
|
28.326
|
12.017
|
50.215
|
49.785
|
16.738
|
11.588
|
45.923
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
278.853
|
823.795
|
267.752
|
173.648
|
191.462
|
401.488
|
487.388
|
234.685
|
73.258
|
197.459
|
144.230
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.849
|
-2.383
|
-0.517
|
— |
1.083
|
0.290
|
-0.880
|
1.197
|
— | — | — | — |
-5.919
|
No JSON data available for plots.