Hg_chrom4_TN10mRNA_8859
Organism: Heterodera glycines Gene Locus: chr4:12449577-12456231 Feature type: polypeptideProtein Sequence
Length: 1,121
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.965 | 1.12 | 0.697 | 0.4 | 0.669 | 1.372 | 0.775 | 1.918 | 0.912 | 1.326 | 0.635 | 1.679 | 1.388 | 1.613 | 1.111 | 1.325 | 0.98 | 0.703 | 0.755 | 0.446 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8324
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
RKCIRQHSEGKKKFQ
|
— | — |
50-76
|
0.992
|
1-22
|
0.847
|
0.992
|
1.000
|
1.000
|
0.127
|
0.029
|
0.025
|
0.272
|
0.313
|
0.450
|
0.279
|
0.134
|
0.761
|
0.145
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009061
|
1.000
|
1.000
|
Hsc_gene_4680.t1
|
Hsc_gene_4680.t1
|
— |
Q9XTG1.1 Neuroligin-1 [Caenorhabditis elegans]
|
KAH7719869.1 Protein NLG-1 d [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.908|GO:0005575_0.874|GO:0110165_0.871|GO:0009987_0.840|GO:0065007_0.763|GO:0016020_0.727|GO:0003674_0.717|GO:0050789_0.691|GO:0032501_0.640|GO:0050794_0.638|GO:0005488_0.607|GO:0032502_0.598|GO:0048856_0.598|GO:0007275_0.572|GO:0071944_0.567|GO:0048731_0.554|GO:0005886_0.552|GO:0051179_0.543|GO:0051234_0.531|GO:0007154_0.530|GO:0023052_0.527|GO:0006810_0.525|GO:0016043_0.510|GO:0043226_0.510|GO:0071840_0.510|GO:0050896_0.508|GO:0007399_0.501
|
IPR002018+46-639+|IPR029058+43-656_47-642+|IPR051093+35-872+
|
— |
PF00135+46-639+Carboxylesterase_family
|
— |
PTHR43903+35-872+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
677-740;784-1121
|
2.000
|
1-676;741-783
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.930
|
123220.370
|
9.603
|
41.500
|
21.320
|
11.329
|
46.744
|
53.256
|
13.470
|
7.850
|
52.899
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
752.581
|
778.754
|
1283.151
|
417.874
|
198.981
|
298.802
|
708.254
|
919.208
|
928.958
|
868.941
|
894.663
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.491
|
-1.035
|
-1.510
|
-1.101
|
0.600
|
1.255
|
1.517
|
-0.234
|
— | — | — | — | — |