SCN Proteipedia

Hg_chrom4_TN10mRNA_8860

Organism: Heterodera glycines Gene Locus: chr4:12462686-12468505 Feature type: polypeptide

Protein Sequence

Length: 696 (Signal peptide: 1-31)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.869	1.671	0.731	0.495	1.03	0.847	0.428	1.149	1.564	1.437	0.435	1.859	1.437	0.718	1.789	0.965	1.107	0.849	1.437	0.634	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8325	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	membrane_bound	transmembrane_domain	cell_membrane	—	—	—	—	—	—	1-31	0.665	1.000	3.000	3.000	0.057	0.043	0.013	0.164	0.242	0.173	0.186	0.007	0.802	0.028

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003976	1.000	2.000	Hsc_gene_4681.t1;Hsc_gene_4681.t2	Hsc_gene_4681.t1;Hsc_gene_4681.t2	—	A8XNX8.2 Ligand-gated ion channel 4 [Caenorhabditis briggsae]	KAI1724357.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0022848\|GO:0034220\|GO:0045211	GO:0005575_0.910\|GO:0110165_0.905\|GO:0016020_0.858\|GO:0008150_0.853\|GO:0005886_0.809\|GO:0071944_0.809\|GO:0009987_0.788\|GO:0065007_0.712\|GO:0003674_0.695\|GO:0050789_0.687\|GO:0051179_0.636\|GO:0050794_0.633\|GO:0006810_0.626\|GO:0051234_0.626\|GO:0023052_0.615\|GO:0007154_0.614\|GO:0050896_0.590\|GO:0055085_0.543\|GO:0032501_0.542\|GO:0007267_0.537\|GO:0030054_0.534\|GO:0045202_0.534\|GO:0098916_0.534\|GO:0099536_0.534\|GO:0099537_0.534\|GO:0007268_0.533\|GO:0051716_0.533	IPR002394+191-207_225-239_262-280+\|IPR006029+374-679+\|IPR006201+158-517_204-220_237-248_282-296_360-372+\|IPR006202+155-366+\|IPR018000+282-296+\|IPR036719+366-684+\|IPR036734+144-370_155-366+\|IPR038050+371-490+	—	PF02931+155-366+Neurotransmitter-gated_ion-channel_ligand_binding_domain\|PF02932+374-679+Neurotransmitter-gated_ion-channel_transmembrane_region	G3DSA:1.20.58.390:FF:000043+372-488+AcetylCholine_Receptor\|G3DSA:2.70.170.10:FF:000016+147-371+Nicotinic_acetylcholine_receptor_subunit	PTHR18945+158-517+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-696	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.751	80091.050	9.007	18.000	24.138	11.494	48.132	51.868	13.937	10.201	46.552

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	magenta	151.035	117.055	273.851	75.873	48.750	49.058	179.770	191.991	41.598	278.447	176.940

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.997	-0.763	-1.742	-0.673	—	1.884	1.869	—	—	—	—	—	—

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